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Unigene SGN-U204914

Unigene Basic Information

Unigene ID:	SGN-U204914
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204914
mRNA sequence:	Length: 366 bp

>SGN-U204914 Capsicum annuum #1 (1 members)
AGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTGCGACCCGGGGAGCATGTTACGATTCTGACTTACTCCAGGATGAGATATCATGT
GATGCAGGCCGCGAAGACACTTGTGAACAAGGGTTATGATCCTGAAGTCATTGATATCAGGTCTCTGAAACCATTTGACCTTTACCCATC
AGGAACTCAGTGAAGAAAACTCATCGTGTGCTCATTGTGGAGGAATGTATGCGCACAGGAGGTATTGGTGCCAGCTTGACAGCCGCTATA
ACTGAGAACTTCCACGACTATCTAGATGCCCCAATTGTATGTCTGTCATCACAAGATGTGCCAACCCCCATATGCTGGGACATTACACAA
CTGGAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
PDHE1beta	Pyruvate Dehydrogenase E1beta	Enzyme produces acetyl-CoA

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E496318
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21593379\|gb\|AAM65328.1\|	120.6	4.9e-27	57.14	363 bp (99.2%)	2
Description:	putative pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana]
arabidopsis	blastx	At2g34590.1	120.6	1.3e-28	57.14	363 bp (99.2%)	2
Description:	At2g34590.1 68409.m03840 pyruvate dehydrogenase E1 beta subunit -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39305 (123 Aa)

EYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYPSGTXVKKTHRVLIVEECMRTGGIGASLTAAI
TENFHDYLDAPIXMSVITRCANPHMLGHYTTGX

SignalP predicts non-secretion with a score of 0.066

IPR005476 Transketolase, C-terminal

Prediction based on longest six frame method

>SGN-P159049 (66 Aa)

PLPIRNSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPICWDITQLD

SignalP predicts non-secretion with a score of 0.143

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	132	Transketolase_CR Transketolase_C	101
2	22154	Transketolase_CR Transketolase_C	53
5	57561	Transketolase_CR Transketolase_C	12
1.1	101625	Transketolase C-terminal Transketolase central region Transketolase C-terminal-like	56
2	118698	Transketolase central region Transketolase C-terminal Transketolase C-terminal-like	35
5	130243	Transketolase central region Transketolase C-terminal Transketolase C-terminal-like	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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