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Unigene SGN-U205044

Unigene Basic Information

Unigene ID:	SGN-U205044
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205044
mRNA sequence:	Length: 399 bp

>SGN-U205044 Capsicum annuum #1 (1 members)
CAAGATCGTTCAGCAGGCTGGAATGTATATGATTCTTCGGATTGGACCATTTGTTGCTGCAGAGTGGAACTTTGGTGGACTTCCTGTATG
GCTGCATTATGTGCCAGGTACCACTTTTCGGACTGATAGCCGAACCATTCAAGCATCACATGCAGAAGTTCATGACATATGTAGTGAACT
TAATGAAGAAAGAGAGGCTTTTTGCATCTCAAGGAGGTCCAATCATCTTGTCACAGGTGGAAAATGAGTATGGCTACTATGAAAATGCAT
ATGGAGAAGGAGGGAAGAGGTATGCCTTATGGGCTGCTAAAATGGCCCTTTCTCAAAATACTGGTGTACCTTGGATAATGTGCCACCAGT
ATGATGCTCCTGATCCTGTGATTGACACATGCAATTCGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506548
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7939621\|gb\|AAF70823.1\|	146.7	5.2e-57	94.44	270 bp (67.7%)	3
Description:	gi\|7939621\|gb\|AAF70823.1\| beta-galactosidase [Lycopersicon esculentum]
arabidopsis	blastx	At5g63810.1	115.5	7.8e-27	60.16	348 bp (87.2%)	3
Description:	At5g63810.1 68412.m07244 glycosyl hydrolase family 35 (beta-galactosidase) similar to beta-gala…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0004565 beta-galactosidase activity
GO:0005975 carbohydrate metabolism
GO:0009341 beta-galactosidase complex

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P159181 (122 Aa)

FFGLDHLLLQSGTLVDFLYGCIMCQVPLFGLIAEPFKHHMQKFMTYVVNLMKKERLFASQGGPIILSQVENEYGYYENAYGEGGKRYALW
AAKMALSQNTGVPWIMCHQYDAPDPVIDTCNS

SignalP predicts non-secretion with a score of 0.353

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39434 (133 Aa)

KIVQQAGMYMILRIGPFVAAEWNFGGLPVWLHYVPGTTFRTDAEPFKHHMQKFMTYVVNLMKKERLFASQGGPIILSQVENEYGYYENAY
GEGGKRYALWAAKMALSQNTGVPWIMCHQYDAPDPVIDTCNSX

SignalP predicts secretion with a score of 0.588

IPR001944 Glycoside hydrolase, family 35

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	127	Glyco_hydro_35	104
2	22049	Glyco_hydro_35	96
5	56314	Glyco_hydro_35	89
1.1	101518	Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	90
2	118505	Galactose-binding like Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	76
5	128994	Galactose-binding like Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	74

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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