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Unigene SGN-U205887

Unigene Basic Information

Unigene ID:	SGN-U205887
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	205887
mRNA sequence:	Length: 402 bp

>SGN-U205887 Solanum melongena #2 (2 members)
CGCCGCCATGAGGCGTCCGAGATTGAGCACCGTCGGGTTGAAATGGCGGCTGTAGATGAAGAAATCTCGGTCGGGACCAAGCTCTCCGGC
GAACATACGGCGCATCGTCTCCGGTTCCATGACCGTGAACGTGGCAGAGGCCTCGATGGACATGTTAACCCCGCCATGTTCGCCGAATTC
GTGGCGAGCATTGGCTAACGCCGCCGCTGGATCCTCCCATACAAGCGATTTCGATTGTTTTTTAGCGACGAAAAGGGAATCGTCGTGATT
GTCCCACTCATCAGAACCCGATGATCTCTTCCTGTTAGAAACAACCATGTTGGTTTGGTTCAATGTATCTGCCATTGCTGAGTAGATTTT
GGTGGACAGAAATATTTGATTTGGGAAATTTCTGGGATCCAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15217709\|ref\|NP_176647.1\|	147.1	4.6e-35	67.89	327 bp (81.3%)	-1
Description:	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE); catalytic/ methionine gamma-lyase [Arabido…
arabidopsis	blastx	At1g64660.1	147.1	2.4e-36	67.89	327 bp (81.3%)	-1
Description:	At1g64660.1 68408.m06717 methionine/cystathionine gamma lyase -related similar to methionine ga…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P208285 (134 Aa)

VDPRNFPNQIFLSTKIYSAMADTLNQTNMVVSNRKRSSGSDEWDNHDDSLFVAKKQSKSLVWEDPAAALANARHEFGEHGGVNMSIEASA
TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLGRLMAA

SignalP predicts non-secretion with a score of 0.104

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P29620 (115 Aa)

MADTLNQTNMVVSNRKRSSGSDEWDNHDDSLFVAKKQSKSLVWEDPAAALANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELG
PDRDFFIYSRHFNPTVLNLGRLMAA

SignalP predicts non-secretion with a score of 0.02

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	420	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	41
2	24232	Aminotrans_V Cys_b_lyase_bac DegT_DnrJ_EryC1 Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf MgtE_integrmembr OAH_OAS_sulfhy	9
5	58281	Aminotrans_V Cys_b_lyase_bac DegT_DnrJ_EryC1 Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf MgtE_integrmembr OAH_OAS_sulfhy	9
1.1	101789	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	37
2	120360	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	9
5	130647	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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