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Unigene SGN-U206230

Unigene Basic Information

Unigene ID:	SGN-U206230
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206230
mRNA sequence:	Length: 355 bp

>SGN-U206230 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTTTAGAGCAAAAAGAACTCCAAGCATAAAACGAGACATTTAATCAGACGTTCGGGACTCGGCATCACGGAGAAC
ATGATAAACAAAGGTCCAAAAATGGAACTTGCACGCAGACCAAAACAAAATTATGACCAACTAAATCTTAAAGATTCAAAACCTTCACCA
CTAATGAGCTTGATAGACAGACGTAGGGCCTACAAGCAAGCATAGACTAAATACCTTGCTTATATGTTGCTTGGGTACATGAAAACTCTA
ACTCTAGCTCCCATGGATTTTGGAGGCACGATTGGATTTGAACTTAGCTCTAACAACACCACTGTATCCATGAGGCCTACAAACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E518681
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003735 structural constituent of ribosome
GO:0006412 protein biosynthesis
GO:0005622 intracellular
GO:0005840 ribosome

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P208642 (67 Aa)

SKKNSKHKTRHLIRRSGLGITENMINKGPKMELARRPKQNYDQLNLKDSKPSPLMSLIDRRRAYKQA

SignalP predicts non-secretion with a score of 0.086

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30956 (97 Aa)

SLWPHGYSGVVRAKFKSNVPPKSMGARVRVFMYPKQHISKVFSLCLLVGPTSAIKLISGEGFESLDLVGHNFVLVWCKFHFWTFVYHVLR
DAEXPNV

SignalP predicts non-secretion with a score of 0.119

IPR001780 Ribosomal protein L35Ae

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	376	Ribosomal_L35AE Glu_tRNA-synt_1c	45
2	22463	Ribosomal_L35AE	28
5	56911	Ribosomal_L35AE	20
1.1	101742	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Glutamyl-tRNA synthetase class Ic - Molecular Function: glutamate-tRNA ligase activity (GO:0004818) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glutamyl-tRNA aminoacylation (GO:0006424)	41
2	118818	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129394	Ribosomal protein L35Ae - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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