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Unigene SGN-U206395

Unigene Basic Information

Unigene ID:	SGN-U206395
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206395
mRNA sequence:	Length: 369 bp

>SGN-U206395 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTTTGAAAATTAAAGACCAAATTCAACGGGGAAAAATAACACTCAAACAGTACACGCCAAGAAAAGAGACATCAA
ATACACGAAATAAACCTAAACAAAAGTCCCTATTAAATCGATGATTTGTTGAAACTTATTCCAATTAAGAACAAAAGCAAAATAACTAAG
CTCATAATTTAGTTGGGGCCACCAAGAACACCCTTCAACTTCTTGATTGTAGCAGCATCAAGGAACGTTGTAGCCGCGACAAGTTCAGTA
GGTAAATCATTAGCAAATAGCGCGAAATCTGTAATTTGAAGACCTGGAGTCGGGCTACTGAAGGAAACAGTAGCCAGAGCTGCAGTTTTT
CCAGAATTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E518880
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|31711507\|dbj\|BAC77634.1\|	103.6	6.1e-22	89.83	177 bp (48.0%)	-2
Description:	24K germin like protein [Nicotiana tabacum]
arabidopsis	blastx	At1g72610.1	87.04	1.6e-18	73.68	171 bp (46.3%)	-2
Description:	At1g72610.1 68408.m07704 germin-like protein (AtGER1) identical to germin-like protein subfamil…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P208813 (59 Aa)

NSGKTAALATVSFSSPTPGLQITDFALFANDLPTELVAATTFLDAATIKKLKGVLGGPN

SignalP predicts non-secretion with a score of 0.183

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P29978 (59 Aa)

NSGKTAALATVSFSSPTPGLQITDFALFANDLPTELVAATTFLDAATIKKLKGVLGGPN

SignalP predicts non-secretion with a score of 0.183

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	153	Cupin_sup Germin Cupin	88
2	22059	Cupin_sup Germin Cupin	88
5	56316	Cupin_sup Germin Cupin	87
1.1	101532	Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735) Cupin RmlC-type	83
2	118494	Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735) Cupin RmlC-type	81
5	128983	Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735) Cupin RmlC-type	81

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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