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Unigene SGN-U206590

Unigene Basic Information

Unigene ID:	SGN-U206590
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206590
mRNA sequence:	Length: 431 bp

>SGN-U206590 Solanum melongena #2 (1 members)
CAATCCAAGAGTATCCTCCTGCCGCCGTTAGAGCAGGAAGGCCCATTTCACGGCGCCTTCCAGTCTTCGTCGGGTGTTGATGAGCGCCCC
CTTGTCCTCTGAGTTGCGAACCAAGTACAACGTTAGGTCCATGCCGGTGAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAA
GGGCCGCGAGGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGGATTACCAGGGAGAAGGTTAACGGATCCAC
TGTTAATGTTGGTATTCATCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAAGTCACTTCTTGACCGTAAGGCTAA
GGGTCGTGCTGCTGCTGATAAGGATAAGGGTACTAAATTCACCGCCGAGGATATCATGCAGACAGTTGATT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E518705
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 5 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15229631\|ref\|NP_190560.1\|	189.1	1e-47	84.62	429 bp (99.5%)	2
Description:	60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana] >gi27735242\|sp\|P51414.2\|RL261_ARATH R…
arabidopsis	blastx	At3g49910.1	189.1	6.6e-49	84.62	429 bp (99.5%)	2
Description:	At3g49910.1 68410.m05053 60S ribosomal protein L26 (RPL26A) 60S RIBOSOMAL PROTEIN L26, Brassica…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005622 intracellular
GO:0003735 structural constituent of ribosome
GO:0005840 ribosome
GO:0006412 protein biosynthesis
GO:0015934 large ribosomal subunit

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209018 (133 Aa)

SRKAHFTAPSSLRRVLMSAPLSSELRTKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKV
VISKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQTVD

SignalP predicts non-secretion with a score of 0.321

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30162 (144 Aa)

IQEYPPAAVRAGRPISRRLPVFVGCXXAAPLSSELRTKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGST
VNVGIHPSKVVISKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQTVDX

SignalP predicts non-secretion with a score of 0.199

IPR006646 KOW (Kyrpides, Ouzounis, Woese) motif
IPR005824 KOW
IPR005756 Ribosomal protein L26, eukaryotic and archaeal form
IPR005825 Ribosomal protein L24/L26

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	216	S-AdoMet_synt	69
2	23089	KOW Ribosomal_L24 Ribosomal_L24_26 Ribosomal_L26e/a	16
5	57177	KOW Ribosomal_L24 Ribosomal_L24_26 Ribosomal_L26e/a	16
1.1	101580	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	69
2	119270	Ribosomal protein L24/L26 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KOW Ribosomal protein L26 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) Translation protein SH3-like KOW (Kyrpides Ouzounis Woese) motif	18
5	129617	Ribosomal protein L24/L26 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KOW Ribosomal protein L26 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) Translation protein SH3-like KOW (Kyrpides Ouzounis Woese) motif	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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