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Unigene SGN-U206665

Unigene Basic Information

Unigene ID:	SGN-U206665
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206665
mRNA sequence:	Length: 414 bp

>SGN-U206665 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAATGACGGTCAAATAACCAAACATCAAAAAAGTATTTCCATGT
CATAAAATTCATACATCAACATCAATTCCATGATCTTAAAACACAAAAACGTGGAACCTAAAAGAAACTTCCACCATCTTTGTATCAAAA
TTCACACACGACACAACCCCTTTTCTTTTTTTCCTCCCTCTAAGCTTTCTTCTTGTCTTTCAATGGCCCTCGAGGGATTTTACTCAATAC
CTTTGCATCAAAGACGGCATACTGTTTCTTGAGTTCATGCAAGGCTTTCTCAGCAAATGCATCCACTTGATCCTCATATTTCTCATACAA
AACAGGTACTGTATGGAGCACAACAACAATTATGTAGAACAGGGTCAAGAAATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E516032
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34904202\|ref\|NP_913448.1\|	94.74	2.7e-19	74.14	174 bp (42.0%)	-1
Description:	gi\|34904202\|ref\|NP_913448.1\| P0492F05.25 [Oryza sativa (japonica cultivar-group)] gi\|13027362\|d…
arabidopsis	blastx	At4g11220.1	87.04	3.2e-18	71.93	171 bp (41.3%)	-1
Description:	At4g11220.1 68411.m01643 expressed protein 24 kDa seed maturation protein - Glycine max,PID:g41…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005783 endoplasmic reticulum
GO:0005554 molecular_function unknown

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209097 (95 Aa)

NTKTWNLKETSTIFVSKFTHDTTPFLFFLPLSFLLVFQWPSRDFTQYLCIKDGILFLEFMQGFLSKCIHLILIFLIQNRYCMEHNNNYVE
QGQEI

SignalP predicts non-secretion with a score of 0.302

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30229 (64 Aa)

DFLTLFYIIVVVLHTVPVLYEKYEDQVDAFAEKALHELKKQYAVFDAKVLSKIPRGPLKDKKKA

SignalP predicts secretion with a score of 0.528

IPR003388 Reticulon

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	220	Reticulon	68
2	22121	Reticulon	60
5	56369	Reticulon	58
1.1	101613	Reticulon - Molecular Function: molecular function unknown (GO:0005554) - Cellular Component: endoplasmic reticulum (GO:0005783)	59
2	118554	Reticulon - Molecular Function: molecular function unknown (GO:0005554) - Cellular Component: endoplasmic reticulum (GO:0005783)	56
5	129043	Reticulon - Molecular Function: molecular function unknown (GO:0005554) - Cellular Component: endoplasmic reticulum (GO:0005783)	54

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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