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Unigene SGN-U206730

Unigene Basic Information

Unigene ID:	SGN-U206730
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206730
mRNA sequence:	Length: 182 bp

>SGN-U206730 Solanum melongena #2 (1 members)
CACTATCAGAGACCGTTTCTCTAGTACCTCTGATGCCGTTCTCGACCTTCTACTTCCTTCCAAAGCGGAGTTGGCTGTCTCGAAATACCC
AAATCGGGTACTCGTTTATAGTTTGGAGGGCGATTGTCCCATGTTCTTTGACATAGATGGGCGAGTTTATGCTCTGTGGAGAGTCCCCGA
AC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E517696
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15217438\|ref\|NP_177291.1\|	78.18	3.5e-14	53.73	180 bp (98.9%)	2
Description:	gi\|15217438\|ref\|NP_177291.1\| expressed protein [Arabidopsis thaliana] gi\|12323729\|gb\|AAG51825.1…
arabidopsis	blastx	At1g71350.1	78.18	8.7e-16	53.73	180 bp (98.9%)	2
Description:	At1g71350.1 68408.m07554 expressed protein similar to LIGATIN GB:Q61211 from (Mus musculus), co…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209165 (60 Aa)

TIRDRFSSTSDAVLDLLLPSKAELAVSKYPNRVLVYSLEGDCPMFFDIDGRVYALWRVPE

SignalP predicts non-secretion with a score of 0.178

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30289 (61 Aa)

TIRDRFSSTSDAVLDLLLPSKAELAVSKYPNRVLVYSLEGDCPMFFDIDGRVYALWRVPEX

SignalP predicts non-secretion with a score of 0.178

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1260	Unchar_dom_2 PUA	15
2	24519	SWIB Drp1 PAS_domain SUI1_arch_bact Unchar_dom_2 TIF_SUI1 PUA	8
5	62731		3
1.1	101633	Nucleoside phosphatase GDA1/CD39 - Molecular Function: hydrolase activity (GO:0016787)	54
2	120644	Uncharacterized domain 2 Translation initiation factor SUI1 - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) PUA - Molecular Function: RNA binding (GO:0003723)	8
5	135887		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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