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Unigene SGN-U206781

Unigene Basic Information

Unigene ID:	SGN-U206781
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206781
mRNA sequence:	Length: 423 bp

>SGN-U206781 Solanum melongena #2 (1 members)
TTTTCTTGAGCAGCATTTCTCAGTTTCAAAATGTATCGTTTTTCCGCAAATCTTGCTTCCAAAGCCAGAGTTGCAAGAACCAGTTCCCAA
AAGATTGGTGGGAGGTTAAATTGGAGTAGAAACTATGCTGTAAAAGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGT
GTTGAGGAGCTTGCTGATGCTGTGAAAGTCACTATGGGTCCAAAGGGGCGTAATGTAGTGATTGAACAAAGTTGGGGTGCACCCAAAGTA
ACAAAAGATGGTGTCACTGTCGCAAAAAGTATTGAGTTTAAGGACAAGGTACAAAATGTCGGTGCTAGCCTTGTAAAACAGGTTGCCAAT
GCCACGAATGATGTTGCTGGTGATGGCACCACTTGTGCAACAGTCCTCACCCGAGCAATATTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E514341
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15229559\|ref\|NP_189041.1\|	223.8	3.7e-58	84.73	393 bp (92.9%)	1
Description:	HSP60 (HEAT SHOCK PROTEIN 60); ATP binding [Arabidopsis thaliana] >gi12644189\|sp\|P29197.2\|CH60A…
arabidopsis	blastx	At3g23990.1	223.8	2.3e-59	84.73	393 bp (92.9%)	1
Description:	At3g23990.1 68410.m02747 chaperonin (CPN60/HSP60) identical to SWISS-PROT:P29197- chaperonin CP…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005515 protein binding
GO:0044267 cellular protein metabolism
GO:0005524 ATP binding

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30336 (131 Aa)

MYRFSANLASKARVARTSSQKIGGRLNWSRNYAVKDIRFGVEARALMLQGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKS
IEFKDKVQNVGASLVKQVANATNDVAGDGTTCATVLTRAIF

SignalP predicts non-secretion with a score of 0.111

IPR002423 Chaperonin Cpn60/TCP-1
IPR001844 Chaperonin Cpn60

Prediction based on longest six frame method

>SGN-P209219 (138 Aa)

AAFLSFKMYRFSANLASKARVARTSSQKIGGRLNWSRNYAVKDIRFGVEARALMLQGVEELADAVKVTMGPKGRNVVIEQSWGAPKVTKD
GVTVAKSIEFKDKVQNVGASLVKQVANATNDVAGDGTTCATVLTRAIF

SignalP predicts non-secretion with a score of 0.179

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	86	Cpn60/TCP-1	147
2	22074	Chaprnin_Cpn60 Cpn60/TCP-1	77
5	56329	Chaprnin_Cpn60 Cpn60/TCP-1	76
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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