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Unigene SGN-U207171

Unigene Basic Information

Unigene ID:	SGN-U207171
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207171
mRNA sequence:	Length: 390 bp

>SGN-U207171 Solanum melongena #2 (1 members)
AGAACCCAAAATCATGGGCCGCAAGAGAGACAGAACCCATTATAATCGCCACGTTCCCTACTCCTTCCCCAAGCGCCGCCGTTCAACTCC
GGCCTCCGACGATCCTCTGCCAGCGCCGGAAGACAATTCATCGTCCACAAAGCAACAACAACCGGCTACAGTGGTGGTTATTGGGGTTCC
TTCTGAATGCTCTGTGCTCGACATTAAATCTCGTTTTGAGATCTATGGATCCATCTCTCGAATTCGTATGGAACCTAATAGTCTCGCTCA
TATCACTTTCCGTTCCAATGATTCTGCTCAATCTGCTGTTGAAGCTGCGGCAGATTCATCTTTCCCCATTACTCTCCACTCAAAGCCTGT
TCAGGTAATATGGGCAACTGACCATGCATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E515971
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|8778855\|gb\|AAF79854.1\|	109	1.4e-23	43.31	369 bp (94.6%)	2
Description:	gi\|8778855\|gb\|AAF79854.1\| T7N9.11 [Arabidopsis thaliana]
arabidopsis	blastx	At1g27050.1	109	6.8e-25	43.31	369 bp (94.6%)	2
Description:	At1g27050.1 68408.m02989 homeobox RRM-containing protein contains Pfam proifle:PF00046 Homeobox…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003676 nucleic acid binding

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209634 (130 Aa)

EPKIMGRKRDRTHYNRHVPYSFPKRRRSTPASDDPLPAPEDNSSSTKQQQPATVVVIGVPSECSVLDIKSRFEIYGSISRIRMEPNSLAH
ITFRSNDSAQSAVEAAADSSFPITLHSKPVQVIWATDHAS

SignalP predicts non-secretion with a score of 0.024

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30699 (130 Aa)

NPKSWAARETEPIIIATFPTPSPSAAVQLRPPDDPLPAPEDNSSSTKQQQPATVVVIGVPSECSVLDIKSRFEIYGSISRIRMEPNSLAH
ITFRSNDSAQSAVEAAADSSFPITLHSKPVQVIWATDHAS

SignalP predicts non-secretion with a score of 0.188

IPR000504 RNA-binding region RNP-1 (RNA recognition motif)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3388		5
2	25691	Homeobox HTH_lambrepressr VlpA_repeat Leu_zip_homeo RNA_rec_mot	6
5	60398		5
1.1	101432	Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-like	183
2	121457	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Helix-turn-helix motif lambda-like repressor - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Leucine zipper homeobox-associated - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6
5	133009		5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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