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Unigene SGN-U207378

Unigene Basic Information

Unigene ID:	SGN-U207378
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207378
mRNA sequence:	Length: 394 bp

>SGN-U207378 Solanum melongena #2 (1 members)
TGTTTTCCTCTTTTTTTTTAAAACCAACGACCCTAAATAGATCGGGGGTTGTTATACAACAAATGGTGATAGAAACCCCTCAGATATCCA
AAAATTCAAAATGGAAACTACCAGGAAAACACAAATTCAAAACTACACGATAGCATTGGCAGCGCTTGCAATCCTAGGCCACAGATCAGC
ACACTCTTTTCCAATGGGACCAGTAATGGCAGAACCCTTCATTTCACCCTTGGGGTTAACAATTACACCAGCATTATCTTCAAAGTACAT
GAAAACACCATCCTTTCGGCGCCACGGCTTGCGCTGACGAACAATGACAGCAGGCATAACCTTCTTCCTCAGGTCAGGCTTACCCTTCTT
GACAGTGGCCATGACCATGTCACCCACACAAGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E518828
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|32400871\|gb\|AAP80667.1\|	175.6	1.2e-43	100	252 bp (64.0%)	-2
Description:	gi\|32400871\|gb\|AAP80667.1\| ribosomal Pr 117 [Triticum aestivum]
arabidopsis	blastx	At3g04400.1	174.5	1.3e-44	98.81	252 bp (64.0%)	-2
Description:	At3g04400.1 68410.m00430 60S ribosomal protein L23 (RPL23C) similar to ribosomal protein L17 GB…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005622 intracellular
GO:0006412 protein biosynthesis
GO:0003735 structural constituent of ribosome
GO:0005840 ribosome

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209850 (107 Aa)

KPLRYPKIQNGNYQENTNSKLHDSIGSACNPRPQISTLFSNGTSNGRTLHFTLGVNNYTSIIFKVHENTILSAPRLALTNNDSRHNLLPQ
VRLTLLDSGHDHVTHTS

SignalP predicts non-secretion with a score of 0.039

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30891 (86 Aa)

ACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

SignalP predicts non-secretion with a score of 0.029

IPR000218 Ribosomal protein L14b/L23e

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	394	Ribosomal_L14b/o Ribosomal_L14	43
2	22457	Ribosomal_L14b/o Ribosomal_L14	28
5	56791	Ribosomal_L14b/o Ribosomal_L14	22
1.1	101733	Ribosomal protein L14b/L23e - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	42
2	118814	Ribosomal protein L14b/L23e - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129367	Ribosomal protein L14b/L23e - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	23

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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