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Unigene SGN-U207404

Unigene Basic Information

Unigene ID:	SGN-U207404
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207404
mRNA sequence:	Length: 444 bp

>SGN-U207404 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTTTTTTTCATGAAATAACACTGAATTATATAATTAAAATAATTACTTGATGAAAATCTTTCCACGTCAAGAAAA
CCAAACACATAATTAAAATAATTAAGTCATACATGCCGCCATGGTCTTTCAGCAAGATTTACACAATCATTATGCCTAAAACAATCAACC
AAATGATCAATTGTCATTCCAGAGGCTTGCATGAATGAATAAACAATTACTGGTCCAACAAATCTGAATCCTTTCTTCAATAAATCTTTG
CTAATTGTTTCTGCTTTGGGTGTTCTTAATGGAACATTTCTTGGATGTCTAAATCTGTTAATTATAGGTTTATAATTCACATAATTCCAC
ATGTAGCTGCTGAATGATCCATATTCTCTCACAACCTTGACTATGCATTTGGCATTGGCAACTATGCATCTAATTCTGCTTTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E515800
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25518014\|pir\|\|E86269	163.7	4.4e-40	68.57	303 bp (68.2%)	-2
Description:	gi\|25518014\|pir\|\|E86269 F21F23.7 protein - Arabidopsis thaliana gi\|8920568\|gb\|AAF81290.1\| Conta…
arabidopsis	blastx	At5g57970.1	128.3	1.5e-30	54.46	303 bp (68.2%)	-2
Description:	At5g57970.1 68412.m06563 expressed protein contains similarity to DNA-3-methyladenine glycosylase
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006281 DNA repair
GO:0008725 DNA-3-methyladenine glycosylase I activity
GO:0006284 base-excision repair

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30915 (105 Aa)

KAELDXIVANAKCIVKVVREYGSFSSYMWNYVNYKPIINRFRHPRNVPLRTPKAETISKDLLKKGFRFVGPVIVYSFMQASGMTIDHLVD
CFRHNDCVNLAERPW

SignalP predicts non-secretion with a score of 0.055

IPR005019 Methyladenine glycosylase

Prediction based on longest six frame method

>SGN-P209877 (108 Aa)

ESRIRCIVANAKCIVKVVREYGSFSSYMWNYVNYKPIINRFRHPRNVPLRTPKAETISKDLLKKGFRFVGPVIVYSFMQASGMTIDHLVD
CFRHNDCVNLAERPWRHV

SignalP predicts non-secretion with a score of 0.073

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	742	Adenine_glyco Tag	25
2	22646	Adenine_glyco Tag	22
5	57396	Adenine_glyco Tag	13
1.1	102060	DNA glycosylase Methyladenine glycosylase - Biological Process: base-excision repair (GO:0006284) - Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725)	23
2	119062	DNA glycosylase Methyladenine glycosylase - Biological Process: base-excision repair (GO:0006284) - Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725)	21
5	130219	DNA glycosylase Methyladenine glycosylase - Biological Process: base-excision repair (GO:0006284) - Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725)	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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