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Unigene SGN-U208563

Unigene Basic Information

Unigene ID:	SGN-U208563
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	208563
mRNA sequence:	Length: 367 bp

>SGN-U208563 Petunia hybrida #1 (2 members)
CAAAAATCCTCAAATAATTCAGTCAACACATTCAAGAAAACCAAAGAATTCTGTTAAGCAAAATTTTGCAAAATTCCCATCATGGCAAAA
AAAGCAGTGTTAATAGGAATCAACTATCCAGGAACAAAAGCAGAGCTAAAAGGATGTATTAATGATGTTACAAGAATGTACAGTTGTTTA
GTCAACCGTTTCGGATTTTCTGAGGATGACATCACTGTTTTAATAGACACTGATGATTCTTACACACAACCGACAGGACGTAACGTACGT
AAAGCTTTGTCTGATCTTGTTGGATCTGCTGAGCCAGGTGATTTCTTGTTTGTACACTATAGTGGACACGGGACAAGATTACCTGCTGAA
ACTGGTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	Petunia-DevA	all floral organs several	2870	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|4235430\|gb\|AAD13216.1\|	171	3.4e-42	84.21	285 bp (77.7%)	1
Description:	latex-abundant protein [Hevea brasiliensis]
arabidopsis	blastx	At1g79340.1	161.4	6.5e-41	78.95	285 bp (77.7%)	1
Description:	At1g79340.1 68408.m08484 putative latex-abundant protein annotation temporarily based on suppor…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0030693 caspase activity
GO:0006508 proteolysis and peptidolysis

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P203869 (103 Aa)

AKFCKIPIMAKKAVLIGINYPGTKAELKGCINDVTRMYSCLVNRFGFSEDDITVLIDTDDSYTQPTGRNVRKALSDLVGSAEPGDFLFVH
YSGHGTRLPAETG

SignalP predicts non-secretion with a score of 0.289

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P41517 (123 Aa)

KNPQIIQSTHSRKPKNSVKQNFAKFPSWQXKAVLIGINYPGTKAELKGCINDVTRMYSCLVNRFGFSEDDITVLIDTDDSYTQPTGRNVR
KALSDLVGSAEPGDFLFVHYSGHGTRLPAETGX

SignalP predicts non-secretion with a score of 0.062

IPR011600 Peptidase C14, caspase catalytic subunit p20

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	490	ICE_p20	36
2	22772	ICE_p20	20
5	57094	ICE_p20	17
1.1	101897	Peptidase C14 caspase catalytic - Biological Process: proteolysis (GO:0006508) - Molecular Function: caspase activity (GO:0030693)	29
2	119459	Peptidase C14 caspase catalytic - Biological Process: proteolysis (GO:0006508) - Molecular Function: caspase activity (GO:0030693)	15
5	129981	Peptidase C14 caspase catalytic - Biological Process: proteolysis (GO:0006508) - Molecular Function: caspase activity (GO:0030693)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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