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Unigene SGN-U209222

Unigene Basic Information

Unigene ID:	SGN-U209222
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	209222
mRNA sequence:	Length: 221 bp

>SGN-U209222 Petunia hybrida #1 (1 members)
TTCTCCTCTAAAACAATCTGGAAATGGTGTTTATCTTGTCAATCTATCCCCGGGATCCATGATGGCTCCTCATGTTAATCCAACCGCACT
AGAGTATGGAATAGTGTTGAGAGGGACTGGGAGAGTGCAAATTGTGTATCCAAATGGGACTTTGTCCATGGATGCCAAGGTGCGAGACGG
GGATGCATTTTGGGTGCCAGGGTGCTTACCTTGCTGCCATA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	cPHA	stamens stamens from open flowers on 18-20 week old plants	6801	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E532582
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7484767\|pir\|\|T10443	113.2	1e-24	72.22	216 bp (97.7%)	2
Description:	probable major protein body membrane protein MP27 / major protein body protein MP32 precursor -…
arabidopsis	blastx	At2g28490.1	100.1	2.1e-22	61.97	213 bp (96.4%)	2
Description:	At2g28490.1 68409.m03133 cupin domain-containing protein similar to preproMP27-MP32 [Cucurbita …
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P204547 (73 Aa)

SPLKQSGNGVYLVNLSPGSMMAPHVNPTALEYGIVLRGTGRVQIVYPNGTLSMDAKVRDGDAFWVPGCLPCCH

SignalP predicts non-secretion with a score of 0.083

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P45246 (73 Aa)

SPLKQSGNGVYLVNLSPGSMMAPHVNPTALEYGIVLRGTGRVQIVYPNGTLSMDAKVETGMHFGCQGAYLAAI

SignalP predicts non-secretion with a score of 0.086

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	169	Cupin	82
2	23675	Cupin_sup Cupin	11
5	58524	Cupin_sup Cupin Sarcolipin	8
1.1	101559	Cupin RmlC-type Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735)	73
2	120157	Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735) Cupin RmlC-type Cupin region	10
5	131325	Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735) Cupin RmlC-type Cupin region	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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