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Unigene SGN-U209889

Unigene Basic Information

Unigene ID:	SGN-U209889
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	209889
mRNA sequence:	Length: 418 bp

>SGN-U209889 Petunia hybrida #1 (1 members)
CCATTTCAAACCACTCCTCCTACAACAGAAGTTCCAGATGAGAAAGAGGAGGATATGGATCAAAGACCAAAACCACGGATATGGAATGGA
GAGGATTATGAGTCTGATGCCGATGAAGACGAGAGGCCTAGACAACGAAGTTCAGATAGTAATCTTACTCCGGTAGAAACAACTAACATG
AGGGATGTTGACAACCACGCCAATGAAGACGACATGGTTGATGATCATCACTAGTACATAGCTCTTCAGCAAGTTGCCAAGTGTAATAAC
TTATAGTTCTCCTGGATTGAAAGTACAACGACATGATCCTTTGACCTTTCCCTTTCATTAGCAATTAAAGTAGAAACAAAAAGAGCTGTT
ATACATGGGACTAACGTACATTGAATATGACAATGGAGTATTATTATTGCTGAGGTCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	Petunia-YF	whole fruit (ovary) several	947	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E536478
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P205229 (77 Aa)

PFQTTPPTTEVPDEKEEDMDQRPKPRIWNGEDYESDADEDERPRQRSSDSNLTPVETTNMRDVDNHANEDDMVDDHH

SignalP predicts non-secretion with a score of 0.02

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P42573 (77 Aa)

PFQTTPPTTEVPDEKEEDMDQRPKPRIWNGEDYESDADEDERPRQRSSDSNLTPVETTNMRDVDNHANEDDMVDDHH

SignalP predicts non-secretion with a score of 0.02

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	343	His_deacetylse	48
2	22959	His_deacetylse_1 His_deacetylse	17
5	57071	His_deacetylse_1 His_deacetylse	17
1.1	101743	Histone deacetylase superfamily	41
2	119611	Histone deacetylase - Molecular Function: histone deacetylase activity (GO:0004407) - Cellular Component: nucleus (GO:0005634) - Biological Process: histone deacetylation (GO:0016575) Histone deacetylase superfamily	14
5	129933	Histone deacetylase - Molecular Function: histone deacetylase activity (GO:0004407) - Cellular Component: nucleus (GO:0005634) - Biological Process: histone deacetylation (GO:0016575) Histone deacetylase superfamily	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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