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Unigene SGN-U210516

Unigene Basic Information

Unigene ID:	SGN-U210516
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	210516
mRNA sequence:	Length: 352 bp

>SGN-U210516 Petunia hybrida #1 (1 members)
CATAAATGATGCTCTAAAGGCAGTTCCTCAAAGCTATGAAGGAAGGTACGTTATTTATATTAAGGAAGGAGTTTATGAAGAGAATATAGT
TGTGACACAAGCCAATCTCACATTTGTTGGAGATGGATCCCAAAAGAGTGTTATCACCGCCAGCAAAAACATTGTGGACGATCTGTCAAC
ATACCAAAGTGCAACAGCTGTTATTGCAGGAGATGGATTCTTTGCATTTAAGGTAGGATTCAGAAACACAGCTGGTCCTGAAAAGTTACA
AGCAGTGGCTCTTCGAGTTCAAGCTGATCATGCCACATTCGTAAATTGCCGCATGGAGGGTTATCAAGCTGTGATCTATGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	cPHA	stamens stamens from open flowers on 18-20 week old plants	6801	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E535696
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25313441\|pir\|\|T52331	149.1	1.4e-35	57.98	351 bp (99.7%)	2
Description:	gi\|25313441\|pir\|\|T52331 pectinesterase (EC 3.1.1.11) [imported] - Salix gilgiana gi\|6714532\|dbj…
arabidopsis	blastx	At2g26450.1	144.4	8.4e-36	56.3	351 bp (99.7%)	2
Description:	At2g26450.1 68409.m02879 pectin methylesterase, putative similar to pectin methylesterase GI:67…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0030599 pectinesterase activity
GO:0042545 cell wall modification
GO:0005618 cell wall

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P205869 (117 Aa)

INDALKAVPQSYEGRYVIYIKEGVYEENIVVTQANLTFVGDGSQKSVITASKNIVDDLSTYQSATAVIAGDGFFAFKVGFRNTAGPEKLQ
AVALRVQADHATFVNCRMEGYQAVIYA

SignalP predicts non-secretion with a score of 0.026

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P43173 (117 Aa)

INDALKAVPQSYEGRYVIYIKEGVYEENIVVTQANLTFVGDGSQKSVITASKNIVDDLSTYQSATAVIAGDGFFAFKVGFRNTAGPEKLQ
AVALRVQADHATFVNCRMEGYQAVIYA

SignalP predicts non-secretion with a score of 0.026

IPR000070 Pectinesterase

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	31	Pectinesterase	291
2	21997	Pectinesterase	205
5	56268	Pectinesterase	197
1.1	101397	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	298
2	118428	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	202
5	128937	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	194

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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