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Unigene SGN-U211180

Unigene Basic Information

Unigene ID:	SGN-U211180
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	211180
mRNA sequence:	Length: 276 bp

>SGN-U211180 Petunia hybrida #1 (1 members)
CAAGCTAGGAAGGAGATGCGCGAGGCATGCTTTGACTATTTGAGCCTCGGTGGAGTATTCTCAGCAGGGCCTGTATCTTTGCTCTCTGGC
TTAAACCCTCGACCACTAAGTCTTGATTGTGATTTCTTTGCTGAGGCTATCTATGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCC
AAACGAATGTGGATTGGAGCCCGACTAATATCGAGTGCATCTGGGATTATCTTCCCCATCATCAAGGCAGAAGGGGTTAGGCAGATGTTC
TTCCCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	cPHA	stamens stamens from open flowers on 18-20 week old plants	6801	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E531520
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|27311240\|gb\|AAO00686.1\|	161.4	3e-39	84.78	276 bp (100.0%)	1
Description:	Putative Squalene monooxygenase [Oryza sativa Japonica Group] >gi108706996\|gb\|ABF94791.1\| Squal…
arabidopsis	blastx	At1g58440.1	156.8	1.8e-39	80.43	276 bp (100.0%)	1
Description:	At1g58440.1 68408.m06092 squalene monooxygenase (squalene epoxidase) (SE), putative similar to …
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P206548 (92 Aa)

QARKEMREACFDYLSLGGVFSAGPVSLLSGLNPRPLSLDCDFFAEAIYGVGRLLLPFPSPKRMWIGARLISSASGIIFPIIKAEGVRQMF
FP

SignalP predicts non-secretion with a score of 0.191

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P43805 (92 Aa)

QARKEMREACFDYLSLGGVFSAGPVSLLSGLNPRPLSLDCDFFAEAIYGVGRLLLPFPSPKRMWIGARLISSASGIIFPIIKAEGVRQMF
FP

SignalP predicts non-secretion with a score of 0.191

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	784	GidA_sub	24
2	22601	GidA_sub	24
5	56740	GidA_sub	24
1.1	102102	FAD dependent oxidoreductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	22
2	119040	FAD dependent oxidoreductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	22
5	129408	FAD dependent oxidoreductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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