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Unigene SGN-U268618

Unigene Basic Information

Unigene ID:	SGN-U268618
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268618
mRNA sequence:	Length: 415 bp

>SGN-U268618 Solanum tuberosum #4 (2 members)
GTACTCTTCAACACTCCCTGCTGCTGGGGTTTCGTCCAGCAATGGCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTC
AGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTA
ATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGT
TGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTATGACCCTTCAACTGGTA
TTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|78191444\|gb\|ABB29943.1\|	238	2e-61	87.94	372 bp (89.6%)	1
Description:	ribosomal protein L11-like protein [Solanum tuberosum]
arabidopsis	blastx	At5G45775.2	237	2e-63	87.23	372 bp (89.6%)	1
Description:	60S ribosomal protein L11 (RPL11D) \| chr5:18582508-18583723 REVERSE
swissprot	blastx	P42794	237	2e-62	87.23	372 bp (89.6%)	1
Description:	60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2

GO Terms Annotations

GO:0006412 protein biosynthesis
GO:0005840 ribosome
GO:0003735 structural constituent of ribosome
GO:0005622 intracellular

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P210458 (138 Aa)

TLQHSLLLGFRPAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELL
RRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVAR

SignalP predicts non-secretion with a score of 0.289

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P71602 (138 Aa)

YSSTLPAAGVSSSNGFREEIEYPMRDIKVQKLVLNISVGESGDRLTRARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELL
RRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVAR

SignalP predicts non-secretion with a score of 0.038

IPR003236 Mitochondrial ribosomal protein L5
IPR002132 Ribosomal protein L5

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	520	Ribosomal_L5 Ribosomal_L5_mit	34
2	22500	Ribosomal_L5 Ribosomal_L5_mit	27
5	56684	Ribosomal_L5 Ribosomal_L5_mit	26
1.1	101834	Mitochondrial ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	34
2	118848	Ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Mitochondrial ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129265	Ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Mitochondrial ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U243574	Solanum tuberosum #3

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