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Unigene SGN-U271321

Unigene Basic Information

Unigene ID:	SGN-U271321
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271321
mRNA sequence:	Length: 435 bp

>SGN-U271321 Solanum tuberosum #4 (2 members)
ATCCAATATACAAATATTAATATGGGAAGAGAATTGTACAAGACGACGAGGATGATGATGCTCCTTGTGCTGCTTGTAACCGTAATAAAG
GTGGAAGCGGTATCAGAATGTAATGGGACAAGCAGCAGCATAGGTGCTTGTCTTGTAGATGTTGATGAGTTCTTGATGGAATCAGAAACA
AGTACTAGGATTCTTGCTGCAGGTGGTAATGCTAGATCACAAAAATTATCTTACGGGTCCGCGGGGAAGAAAGCAGCCATATGTAATGAA
AAAATTTACGGTAATTGCATCAATAATAAGAACGTTAAGGCAACACGCTGCAATTCTGGTACCCGCTGCAAACGTGATGTAATATCCCAT
TAGTAAATATTTATGTACAAGTCTCCAAGGGTATCAACTACCTCTTTGCTTTACTTGAACCAATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|37695577\|gb\|AAR00328.1\|	173	7e-42	85.96	336 bp (77.2%)	2
Description:	rapid alkalinization factor 4 [Solanum chacoense]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P213183 (120 Aa)

IQYTNINMGRELYKTTRMMMLLVLLVTVIKVEAVSECNGTSSSIGACLVDVDEFLMESETSTRILAAGGNARSQKLSYGSAGKKAAICNE
KIYGNCINNKNVKATRCNSGTRCKRDVISH

SignalP predicts secretion with a score of 0.685

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P74327 (116 Aa)

IQYTNINXGKRIVQDDEDDDAPCAACNRNKGGAVSECNGTSSSIGACLVDVDEFLMESETSTRILAAGGNARSQKLSYGSAGKKAAICNE
KIYGNCINNKNVKATAAILVPAANVM

SignalP predicts non-secretion with a score of 0.057

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1667		11
2	25821		6
5	62959		3
1.1	102965	Rapid ALkalinization Factor	9
2	121984		6
5	138304		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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