Sol Genomics Network

Unigene SGN-U273063

Unigene Basic Information

Unigene ID:	SGN-U273063
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273063
mRNA sequence:	Length: 1441 bp

>SGN-U273063 Solanum tuberosum #4 (6 members)
CTCAAGTCCGCCTAGGGTGACCATTTCTTACCAGCCTCAAAGACTTCAGAGCAAAGCTTCCAGGCTTGGGAAACTGATGATGTATGCCCT
TATTTCCATGCATATGGAATTGAGAAAATCGTATGGACCTGAAGAGTCTGGTTTCCCTCAATGGATCAGATGGGAAAACTTGAACTACTT
CCTAGGGCACTAAAGGATATTGTTTTAGGCAGTGAAAGTATAGAGCTTGGTGGATGGCTGTCATACAGGTTGGGGGAATCAAAAAAGTTT
ATGAAATTGGCCGTATATTCCGCAATGAAGGCATTTCAACTCGTCATAATCCTGAATTCACCTCCATTGAGATGTATGAAGCATACTCTG
ACTATGAAAGCATGATGAATATGGCAGAAGATATTGTGACACGATGTGCCCTTGCCAGTTAATGGGAAACTTAAAATTGATTACCAGGGT
GTGGAGATCTGCTTGGAAAGACCTTGGAGGAGGGAAACAATGCATAATCTTGTCAAAGAAGCTACAGGGATTGATTTTAAAAACTTCGGT
GACGATCTTAATGCTGCTAAAGAACATGCTCGTAAAGCAATTGATATTCTTGGTGATGATCTGGATAAGAGTTCAATTGAAGCATGCTCT
TCTGTTGGCCATTTGCTTAATGAGGTCTTTGAGATGGTAGTAGAACCAAAGCTTCTACAACCGACTTTTGTCTTGGACTATCCTATTGAA
ATATCTCCACTGGCCAAGCCACATAGAAGACATTCAGGCTTAACTGAGAGATTCGAGCTATTCATTTGTGGTCGTGAGATGGCAAATGCC
TTCTCAGAATTAACTGATCCTCTGGACCAGAGGAGACGCTTGGAGGAGCAAGTGAGGCAACATAATGAGAAAAAAGCCGCATCAGGTTTA
AATAAGGCTGGTTCCAAGGAACAAGAGAACAAAGATGATGATGATGACTCGTATGAAGTAACTCTTGACGAAGATTTCCTCACAGCTTTG
GAATACGGAATGCCTCCGGCTTCTGGAATGGGACTTGGCATCGACAGGCTAGTAATGCTTTTGACAGACTCACCTAGCATCCGCGATGTT
ATTGCTTTCCCAGTCCTCAAGATTCAACAATAACACTTGATGAATAGTTGCTTATTACACACAATATCGCCAATTTTGTGCTAGGATTGT
CGTCTTTATTACCTGAGAAAGTCGAGTTTGAGCAAAAAATTCAATAATAGAACTTTTTTTTTTCGCGAAATATATGCAAGTGTTGTTCAC
ATCATTTTTGTGATTCTTGCAGTTCTAACTGGACATTGTCAATTGTAACTTGATAAGTGTTGAACACAATACACTTGTTGGTTTTATTTA
TTTAGCTTGATAGATTCTTGTAAAAGATACATCATATCTAATGGAAGAAAAAACTATAGTCAATGCTATTCATTGATTCCTTTAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 8 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	337	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	49
2	23082	GenX AsnS AspS_arch tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti tRNA-synt_2 AspS_bact	16
5	59761	GenX AsnS AspS_arch tRNA-synt_2b tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti RNA_pol_omega tRNA-synt_2 AspS_bact	6
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	119606	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Lysyl-tRNA synthetase class-2 - Molecular Function: lysine-tRNA ligase activity (GO:0004824) - Molecular Function: ATP binding (GO:0005524) - Biological Process: lysyl-tRNA aminoacylation (GO:0006430) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	14
5	131941	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Lysyl-tRNA synthetase class-2 - Molecular Function: lysine-tRNA ligase activity (GO:0004824) - Molecular Function: ATP binding (GO:0005524) - Biological Process: lysyl-tRNA aminoacylation (GO:0006430) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U250844	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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