Sol Genomics Network

Unigene SGN-U277629

Unigene Basic Information

Unigene ID:	SGN-U277629
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	277629
mRNA sequence:	Length: 831 bp

>SGN-U277629 Solanum tuberosum #4 (2 members)
CAAAAGGAGATTTTAAAGGAAAATTTCGCGAGATTGGGGCTCTGCTANTGTTGGAGAGTGGAAGAACAACGGCCTGNCTAGATCAGCTGA
TGACTCCAACAGAGGTGTACATTTTACAGCAACAAGGCAAAAGATTGATCTTTTCACAGCAGAGGCAACAAGAAATACTTTCAGATGTTG
ATCCTATCATGCTGAAAGTCAGAAAGATAATGCATGGGACAGGGATCAATGATGGTGACCCCTTATCTGCTGATGACCAGTCATATATTA
TCGACACGGTTCTCAATTACCACCCGGATAAAGCTGTCAAGATGGGAGCCGGTCTTGATTATATTACGGTGAGCAAACATACAAACTTCC
AGGATACTAGATGCTTCTACGTCGTCTCTACTGATGGTGCCAAGCAAGATTTCTCCACCCGGAAATGTCTGGAGAACTTTGTCAGATCAA
AATATCCTGATAAGGCTGAGAGTTTCAATGAAAAGTACTTCAAGAAGCCGCCTCCACCTCGTGTCCCCAAGATTGCTTCTCCAGCACCAT
CAGTTGGTTGATCTTCTGCTTAGTTTGGATAGTTGTATAGTTAACTTGGCCGCCTTGTGTTAACTTATGGTAAAACAAAATGTGCATCTT
GACAAATTGGCAGTTAGAAAGGTTCTTGTGTATATAGTTTAGTCCTTAACTTATACTAGAATTTTCAACAAAGTCCCTTTCAAGGCTGTT
TGGCAACGGAGGCTTAGCCCAGAAGAGCCTTAGTAATCCACCGTTACTGGCATTGATGATGATTGATAACTTCTTCTTTTTCTCTATTTT
GTTACTATTTCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	475	RNA_pol_Rpb1_4 RNA_pol_A RNA_pol_Rpb1_3	37
2	26547		5
5	88579		1
1.1	101846	RNA polymerase Rpb1 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	33
2	121000	RNA polymerase I subunit A N-terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase alpha subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Cellular Component: nucleus (GO:0005634) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb1 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	7
5	134895	RNA polymerase I subunit A N-terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase alpha subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Cellular Component: nucleus (GO:0005634) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb1 domain 1 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb1 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb1 domain 5 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264795	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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