Sol Genomics Network

Unigene SGN-U278054

Unigene Basic Information

Unigene ID:	SGN-U278054
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	278054
mRNA sequence:	Length: 674 bp

>SGN-U278054 Solanum tuberosum #4 (4 members)
AAACCTTCATGTCAAAAAGGCTTCATTCTTGATGGTTTCCCAAGGACAGTGGTTCAAGCAGAAAAGCTAGATGAGATGCTTCAGAAGCAG
GGGGCCAAGATTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCTTGGAAGAGCGGATCACAGGCCGGTGGATTCACCCTTCAAGT
GGTAGATCTTATCACACCAAATTCCAACCCCCAAAAGTTCCTGGCGTCGATGATGTCACTGGAGAGCCTTTAATTCAACGGAAAGATGAT
ACTGCTGAGGTTCTCAAATCAAGGCTAGACGCATTTCACCGTCAAACTGAGCCGGTAATCAATTATTATTCCACCAAAGGTGTTGTTGCA
AGCCTTCATGCTGAGAAACCACCAAAGGAAGTTACTTCTGAGGTTAAAAATGTGTTGTCTTCTTGAAAAAGATCATCTATCACAAGAAAA
TTGAGACATTTTTTTTTGTATTATCGGAAAAAAAAAATTTCTGATTTTTTGTTGTGTTATCTGCGGCTTTTTGTGCAAGTCCCTGAGGAA
TTATTGTTTGTATGGGGAATTTTCGCTAATAATTTTAGAAATAACTTCACATTGGAATAATGATCCATATAAGCCAAATCTTGATTTGGG
ATTTGAGCATAGTTAATTGATATGTGATTTGATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	306	UMP_CMP_kinase Adenylate_kin Adenylate_kin1 Adenyl_kin_sub	52
2	23532	UMP_CMP_kinase Adenylate_kin Adenylate_kin1 Adenyl_kin_sub ADK_lid	12
5	58533	UMP_CMP_kinase Adenylate_kin Adenylate_kin1 Adenyl_kin_sub ADK_lid	8
1.1	101693	Adenylate kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate/cytidine kinase N-terminal - Molecular Function: ATP binding (GO:0005524) - Molecular Function: nucleotide kinase activity (GO:0019201)	46
2	119522	Adenylate kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate/cytidine kinase N-terminal - Molecular Function: ATP binding (GO:0005524) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate kinase subfamily - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: phosphotransferase activity phosphate group as acceptor (GO:0016776) - Molecular Function: nucleotide kinase activity (GO:0019201)	15
5	131539	Adenylate kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate/cytidine kinase N-terminal - Molecular Function: ATP binding (GO:0005524) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate kinase subfamily - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: phosphotransferase activity phosphate group as acceptor (GO:0016776) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate kinase lid region - Molecular Function: adenylate kinase activity (GO:0004017)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U250206	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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