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Unigene SGN-U284461

Unigene Basic Information

Unigene ID:	SGN-U284461
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	284461
mRNA sequence:	Length: 444 bp

>SGN-U284461 Solanum tuberosum #4 (2 members)
GTTTAATCTATCCAAGTCATTTTGCTGAGAGATGGGCGGAATGGGGAGATTTGTCCCGAATAGATTCTAATTATGTCCGACCGGCATACC
CCTCTATTCCTCCTTTGGATTTTGCGATGGATGTTTCTAGAATGAGGAATTTAGCCTGTTACATGAGTCACAGTTCAAGCCCCAATGTTC
TAGTACAGCCTGTGCTGTATGATCATAATAGTGTATCTTTCCCTCACCTCATGCTCTTTGCAATGGAGAATATCCCTCCCCTAAGGGAAC
TCAGCATTGATTATGGAATGGCTGATGACTACACAGGGAAGCTTGCCATCTGCAATTGACTACCTCATGGGAACTGTTGCAGTTTTGAGA
GTGATGCAGCATAGCTATTTTCGGCACATCATGTACTAAAGATGAAGGCGTGGTTGTTGGTGAACCTTTTCCCTATTTCCTTTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224102253\|ref\|XP_002312611.1\|	190	4e-47	76.85	324 bp (73.0%)	1
Description:	hypothetical protein POPTRDRAFT_419224 [Populus trichocarpa] >gi222852431\|gb\|EEE89978.1\| hypoth…
arabidopsis	blastx	At2G33290.1	163	3e-41	64.81	324 bp (73.0%)	1
Description:	Symbols: SUVH2 \| SUVH2 (SU(VAR)3-9 HOMOLOG 2) \| chr2:14117155-14119110 FORWARD
swissprot	blastx	O22781	163	3e-40	64.81	324 bp (73.0%)	1
Description:	Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specif…

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P87019 (137 Aa)

MGGMGRFVPIDSNYVRPAYPSIPPLDFAMDVSRMRNLACYMSHSSSPNVLVQPVLYDHNSVSFPHLMLFAMENIPPLRELSIDYGMADDY
TGKLAIAIDYLMGTVAVLRVMQQAIFGTSCTKDEGVVVGEPFPYFLX

SignalP predicts non-secretion with a score of 0.083

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P226441 (108 Aa)

LIYPSHFAERWAEWGDLSRIDSNYVRPAYPSIPPLDFAMDVSRMRNLACYMSHSSSPNVLVQPVLYDHNSVSFPHLMLFAMENIPPLREL
SIDYGMADDYTGKLAICN

SignalP predicts non-secretion with a score of 0.088

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	61	SET	197
2	22488	G9a	27
5	90635		1
1.1	101405	Nuclear protein SET	263
2	118988	SRA-YDG	23
5	129513	SRA-YDG Nuclear protein SET Pre-SET - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270) - Biological Process: chromatin modification (GO:0016568) - Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024)	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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