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Unigene SGN-U286777

Unigene Basic Information

Unigene ID:	SGN-U286777
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	286777
mRNA sequence:	Length: 336 bp

>SGN-U286777 Solanum tuberosum #4 (1 members)
CAAAAAACGAGCAGAAGAGCATGGAGGCGGCGGCAGCAACGGCGGAATCTGTTCAATGCTTCGGGCGGAAGAAGACGGCTGTAGCAGTAA
CCCACTGCAAACGCGGTAAAGGTTTGATCAAGATCAACGGTGTACCTATCGAGCTAGTGCAACCAGAGATTCTCAGGTACAAGGCTTATG
AACCTATTTTACTTTTAGGACGACACCGTTTTGCTGGTGTAGACATGAAGATCCGTGTGAAAGGTGGAAGGCACACCTCACCAATCTATG
CCATTCCTCAGTCCATTGCCAAAGCACTTGGTGCATTTTAACAGAAATATGGTGATGAACAGTCCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E457135
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224060503\|ref\|XP_002300225.1\|	174	2e-42	86.41	309 bp (92.0%)	1
Description:	predicted protein [Populus trichocarpa] >gi118481666\|gb\|ABK92774.1\| unknown [Populus trichocarp…
arabidopsis	blastx	At2G09990.1	159	4e-40	76.7	309 bp (92.0%)	1
Description:	40S ribosomal protein S16 (RPS16A) \| chr2:3788525-3788965 FORWARD
swissprot	blastx	P46293	163	3e-40	82.35	306 bp (91.1%)	1
Description:	40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P228798 (102 Aa)

KNEQKSMEAAAATAESVQCFGRKKTAVAVTHCKRGKGLIKINGVPIELVQPEILRYKAYEPILLLGRHRFAGVDMKIRVKGGRHTSPIYA
IPQSIAKALGAF

SignalP predicts non-secretion with a score of 0.035

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P97164 (111 Aa)

KNEQKSMEAAAATAESVQCFGRKKTAVAVTPANAVKGLIKINGVPIELVQPEILRYKAYEPILLLGRHRFAGVDMKIRVKGGRHTSPIYA
IPQSIAKALGAFYRNMVMNSP

SignalP predicts non-secretion with a score of 0.042

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1196	Ribosomal_S9	16
2	23075	Ribosomal_S9	16
5	57154	Ribosomal_S9	16
1.1	102205	Ribosomal protein S9 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	19
2	119189	Ribosomal protein S9 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	19
5	129540	Ribosomal protein S9 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U259049	Solanum tuberosum #3

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