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Unigene SGN-U288228

Unigene Basic Information

Unigene ID:	SGN-U288228
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288228
mRNA sequence:	Length: 297 bp

>SGN-U288228 Solanum tuberosum #4 (1 members)
GAGGCTTCTCTCCGGTCGCGCGGTTGATACGGTTGTTGCCGGTGGTGTTCCGGACAGTTCAGTTATTCCCGTCCGGAATTCTCGGTCGAT
ATATCCACCTTGTTGTAGCAATTTCTTCTCCATTTGTTGGATAAAGCAAAGCACTTTAGACAAACAGAAGAAATGTCTGGCAGAACAAGA
AACAGTTTTCAGATTTGGCAAAATTTGTTGACAAGGGTGTGCAAGTCAAGCTTACTGGTGGAAGACAAGTGCGTAGGAACACTTAACAGG
CTATGGACCAACTGCTTAATCTTGTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STOL	Stolon	6462	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E568828
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P230295 (75 Aa)

LAHPCQQILPNLKTVSCSARHFFCLSKVLCFIQQMEKKLLQQGGYIDREFRTGITELSGTPPATTVSTARPERSL

SignalP predicts non-secretion with a score of 0.178

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98508 (95 Aa)

EASLRSPVDTVVAGGVPDSSVIPAGILGRYIHLVVAISSPFVGKAKHFRQTEEMSGQNKKQFSDLAKFVDKGVQVKLTGGRQVRXEHLTG
YGPTA

SignalP predicts non-secretion with a score of 0.177

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	212	snRNP_Sm	69
2	22975	snRNP_Sm	17
5	91884		1
1.1	101446	NmrA-like - Biological Process: regulation of nitrogen utilization (GO:0006808) - Molecular Function: transcriptional repressor activity (GO:0016564)	150
2	122252	Like-Sm ribonucleoprotein-related core Like-Sm ribonucleoprotein eukaryotic and archaea-type core - Biological Process: mRNA processing (GO:0006397) - Cellular Component: ribonucleoprotein complex (GO:0030529) Like-Sm ribonucleoprotein core - Cellular Component: nucleus (GO:0005634) - Cellular Component: small nucleolar ribonucleoprotein complex (GO:0005732) - Biological Process: mRNA processing (GO:0006397)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260045	Solanum tuberosum #3

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