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Unigene SGN-U288294

Unigene Basic Information

Unigene ID:	SGN-U288294
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288294
mRNA sequence:	Length: 353 bp

>SGN-U288294 Solanum tuberosum #4 (1 members)
GAGAGATAAAACTCAAANTCATACATATTAGTACTTAGCTGTACAGATGTTTCTAAGAGTACTGCATATATGTTACAGGTTCATGCAGTT
TTGAATACAAAAGGTTGTTAACAACGCATAGCAGTTTTCTTATGATCACACCCTATTACATTATATATATATATATATATATATATATAT
ATCAGCTTAACGCTTGACTGAAATCTCATTTCAACACTAATTTGTGACTCAGCTGAGCCCTGAGAGATGACAAATTGAGAACTGGCCTGT
TAAGTGCTTTCTCCTTCTTAATCTGGATTAGCTGGTCATAAACACACCAGGGAAAGCTAATGAAATGATCTCTTTTCAACCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cam	J04559 calmodulin	calmodulin

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E426988
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|113205257\|gb\|AAT38687.2\|	100	7e-20	100	144 bp (40.8%)	-1
Description:	RNA-directed RNA polymerase, putative [Solanum demissum]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P230363 (53 Aa)

QASSQFVISQGSAESQISVEMRFQSSVKLIYIYIYIYIYNVIGCDHKKTAMRC

SignalP predicts non-secretion with a score of 0.076

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98572 (55 Aa)

GLKRDHFISFPWCVYDQLIQIKKEKALNRPXSQFVISQGSAESQISVEMRXSVKR

SignalP predicts non-secretion with a score of 0.101

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	634	RdRP	29
2	22893	RdRP	18
5	57322	RdRP	14
1.1	101970	RNA dependent RNA polymerase	26
2	119297	RNA dependent RNA polymerase Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166)	17
5	129642	RNA dependent RNA polymerase Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166)	17

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U261403	Solanum tuberosum #3

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