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Unigene SGN-U289319

Unigene Basic Information

Unigene ID:	SGN-U289319
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289319
mRNA sequence:	Length: 259 bp

>SGN-U289319 Solanum tuberosum #4 (1 members)
AAAAAGTTTAAAGAACAAACAAGAGAGAGAAAGACAGAAGGTCACTGTTAGAGAGAGAAAGAGAGGCATTTGTCACTCCAAAGTCCCAAC
AGTCCAAACAGAGCTGAGCTGCGGTGGTGTGTGGTGGAGGACGGTGGAGCAAAATAGTGATGGGCGTTTGTGAGAGCAACAATGGAAGAA
GAAATCATAACTGGAATGCTGGTTATTCCTACCCTTGTTGTTGTTACTGTTACTACTGCTGTGACCCTGCTTACCACCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E478825
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P231423 (69 Aa)

VVSRVTAVVTVTTTRVGITSIPVMISSSIVALTNAHHYFAPPSSTTHHRSSALFGLLGLWSDKCLSFSL

SignalP predicts non-secretion with a score of 0.397

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P99553 (87 Aa)

KKFKEQTRERKKKVTVRERKRGICHSKVPTVQTELSCGGVWWRTVEQNSDGXFVRATMEEEIITGMLVIPTLVVVTVTTAVTLLTTX

SignalP predicts non-secretion with a score of 0.026

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	203	Znf_ring	72
2	50484		1
5	92182		1
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	119419	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	16

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260843	Solanum tuberosum #3

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