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Unigene SGN-U289910

Unigene Basic Information

Unigene ID:	SGN-U289910
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289910
mRNA sequence:	Length: 414 bp

>SGN-U289910 Solanum tuberosum #4 (1 members)
GACGTGTGGAGGGGAACGACATGAAAATCAAGGCGTTGAATGTGTGGATGCGCAGAAAAGAAGCTATTCAAATGGTTAGATTCAGCGGCA
GAGACAGTAGGCTGGGCAGGAAGTAAAGTGACCTTACAATTACGAGAAGCTAACATGGCAGCAAGGCGAAGGAATGGCATCAAATGTCCC
ATTCCAGCCAGGGGCGGAGCTATGACATGGCGAGGGTGGTCAGATGAACAACCTTCGTCGGAAATTTTTTACGGGTATATATACTAAATA
TCGAGTTTTTTGGATATATACTAACTGTTGAACAACCTTGACACAATAAAGGTTGACAGCCCAGCGGTTAAGGTTGTGCAAAGATGCCTC
AGCGTTGCGGGTTCGAGCCCAAGTGTTGGCGTTTTCTTTAAATTTTTTCATTAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E399992
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255584327\|ref\|XP_002532899.1\|	77	6e-13	50	222 bp (53.6%)	-1
Description:	UDP-glucosyltransferase, putative [Ricinus communis] >gi223527333\|gb\|EEF29479.1\| UDP-glucosyltr…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P232028 (83 Aa)

KISDEGCSSDHPRHVIAPPLAGMGHLMPFLRLAAMLASRNCKVTLLPAQPTVSAAESNHLNSFFSAHPHIQRLDFHVVPLHTS

SignalP predicts non-secretion with a score of 0.236

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100079 (138 Aa)

IMKKFKENANTWARTRNAEASLHNLNRWAVNLYCVKVVQQLVYIQKTRYLVYIPEKISDEGCSSDHPRHVIAPPLAGMGHLMPFLRLAAM
LASRNCKVTLLPAQPTVSAAESNHLNSFFSAIHTFNALIFMSFPSTRX

SignalP predicts non-secretion with a score of 0.1

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	4127		4
2	28985		3
5	92367		1
1.1	101376	UDP-glucuronosyl/UDP-glucosyltransferase - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity transferring hexosyl groups (GO:0016758)	505
2	125702		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262686	Solanum tuberosum #3

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