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Unigene SGN-U291833

Unigene Basic Information

Unigene ID:	SGN-U291833
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	291833
mRNA sequence:	Length: 431 bp

>SGN-U291833 Solanum tuberosum #4 (1 members)
GTGGCAGGATGTAGTTCCAAAATATCCAGTTACATGTGATGTAGAATGGGTTGATGCCGAAGATCCACTTTTCCTACTTTACACTAGTGG
TAGTACTGGAAAGCCTAAGGGTGTTCTTCATACAACTGGAGGCTATATGGTATACACTGCTACAACATTCAAGTATGCATTTGACTACAA
ACCAAAAGACATTTATTGGTGTACAGCTGACTGCGGTTGGATTACTGGTCATAGTTATGTTACATATGGACCTTTACTGAATGGAGCAAC
CAATGTGGTTTTTGAAGGGGCTCCGAATTTTCCAGATGCGGGACGTTGTTGGGATATTGTTGATAAGTATAAAATTTCAATTTTTTACAC
CGCTCCCACATTAGTAAGATCTCTCATGCGCGAGGGAGACGAGCATGTGACTCGATATTCAAGAAAATCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E461434
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|4107276\|emb\|CAA67130.1\|	299	8e-80	94.41	429 bp (99.5%)	3
Description:	acetyl-CoA synthetase [Solanum tuberosum]
arabidopsis	blastx	At5G36880.2	279	4e-76	86.01	429 bp (99.5%)	3
Description:	AMP binding / acetate-CoA ligase/ catalytic \| chr5:14552191-14557526 REVERSE
swissprot	blastx	Q9QXG4	224	2e-58	67.13	429 bp (99.5%)	3
Description:	Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P234001 (143 Aa)

WQDVVPKYPVTCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPKDIYWCTADCGWITGHSYVTYGPLLNGAT
NVVFEGAPNFPDAGRCWDIVDKYKISIFYTAPTLVRSLMREGDEHVTRYSRKS

SignalP predicts non-secretion with a score of 0.062

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P90157 (143 Aa)

WQDVVPKYPVTCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPKDIYWCTADCGWITGHSYVTYGPLLNGAT
NVVFEGAPNFPDAGRCWDIVDKYKISIFYTAPTLVRSLMREGDEHVTDIQENL

SignalP predicts non-secretion with a score of 0.062

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	51	AMP-bind	230
2	23627	AMP-bind PBS_lyase_HEAT Acac_CoA_synth	11
5	58335	AMP-bind PBS_lyase_HEAT Acac_CoA_synth	9
1.1	101420	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	214
2	120053	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Acetate--CoA ligase - Molecular Function: acetate-CoA ligase activity (GO:0003987) - Molecular Function: AMP binding (GO:0016208)	11
5	130528	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Acetate--CoA ligase - Molecular Function: acetate-CoA ligase activity (GO:0003987) - Molecular Function: AMP binding (GO:0016208)	10

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262478	Solanum tuberosum #3

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