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Unigene SGN-U292446

Unigene Basic Information

Unigene ID:	SGN-U292446
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292446
mRNA sequence:	Length: 348 bp

>SGN-U292446 Solanum tuberosum #4 (1 members)
TTTTTTTTTTTTTTTTTTTTTTTTGATTCCACAACTTGAACTCGTGAAGACAACTTTATTGTTGCTACAAGGTTCACTTCATGTTACAAC
ATGATAATGTCTCAAAAACATCAGACAAAAGAATAGAGACGTTTAGGCTACGATACAACACTCAGCAATTTTGAATCCTTCAAACAGTTG
CATAAATGGCAAAAATTATACCGACTGCAAATGCATCTGCCAAAAAGATCATTTGTTGAGGGCTCAAGGAAGCCTCCTCTTAAAAAAATT
AAACAGCAGCAGGAGTTTTGCTGTCGATAGACTTGAGCACTTCTTCACCCATTTCCTTGCATCCGACCAATTTATGTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E415286
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P234625 (71 Aa)

ATIQHSAILNPSNSCINGKNYTDCKCICQKDHLLRAQGSLLLKKLNSSRSFAVDRLEHFFTHFLASDQFMS

SignalP predicts non-secretion with a score of 0.04

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P90730 (25 Aa)

HKLVGCKEMGEEVLKSIDSKTPAAV

SignalP predicts non-secretion with a score of 0.044

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	637	Prok_nadp_idh Mito_nad_idh LeuB Isodh	29
2	24152	Prok_nadp_idh Mito_nad_idh LeuB Isodh	9
5	58203	Prok_nadp_idh Mito_nad_idh LeuB Isodh	9
1.1	101975	Isocitrate/isopropylmalate dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	26
2	120328	Isocitrate/isopropylmalate dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	9
5	130610	Isocitrate/isopropylmalate dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262772	Solanum tuberosum #3

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