Sol Genomics Network

Unigene SGN-U292805

Unigene Basic Information

Unigene ID:	SGN-U292805
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292805
mRNA sequence:	Length: 575 bp

>SGN-U292805 Solanum tuberosum #4 (1 members)
CTTCCATTATCAAGGCACTTGCTGAAGCCTGTGGTGCTAAAGAAGCACATATCAAGAAGCAATACAAGGAGCTTGGAGATTTGGGCCTTG
TTGCAAAAGCAAGTCGTTCATCACAGCCTCTGATGCATAAACCAGAAGCACTGACTGTTGCCAAAGTTTTTGACACATTTCGGATCATTG
CCAAGGAATCTGGAAAGGATAGTCAGGAAAAGAAAAAGAATTACATTAAATCACTGCTTGTTGCAGCCACTGATTGTGAACCCCAATATT
TGATTCGTCTCCTCCAGACAAAGCTACGCATTGGTTTGGCTGAACAAACACTGTTAGTCGCAATCGCTCATGCTTTTGTGTACTCAGATA
AGCATTCATCACCTCCTGCAGGTGTAGATTCTCCTTTGGAAGAGGCCGCCAAGATTGTAAAGCAAGTGTTCTCTGTGATTCCAGTTTATG
AAAAAATTGTCCCTGCTCTTCTAGCTGATGGTGTTTGGAAGCTTTCAGAAACATGTGGTTTCTCACCTGGTGTTCCGGTTGGACCTATGC
TAGCTAAGCCAACCAAAGGAGTATCTGAAATTCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E458727
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	598	DNA_ligase	31
2	23731	DNA_ligase	11
5	58008	DNA_ligase	10
1.1	101668	Sterile alpha motif homology Sterile alpha motif SAM	48
2	120075	DNA ligase N-terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310) ATP dependent DNA ligase central - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Molecular Function: ATP binding (GO:0005524) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310) ATP-dependent DNA ligase - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Molecular Function: ATP binding (GO:0005524) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310) ATP dependent DNA ligase C-terminal - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310)	10
5	130561	DNA ligase N-terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310) ATP dependent DNA ligase central - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Molecular Function: ATP binding (GO:0005524) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310) ATP-dependent DNA ligase - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Molecular Function: ATP binding (GO:0005524) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310) ATP dependent DNA ligase C-terminal - Molecular Function: DNA ligase (ATP) activity (GO:0003910) - Biological Process: DNA replication (GO:0006260) - Biological Process: DNA repair (GO:0006281) - Biological Process: DNA recombination (GO:0006310)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U263504	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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