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Unigene SGN-U292882

Unigene Basic Information

Unigene ID:	SGN-U292882
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292882
mRNA sequence:	Length: 445 bp

>SGN-U292882 Solanum tuberosum #4 (1 members)
CTGCAGGTTGACATTTCCCGAGAACCAGGTCTAGATATGTTATAAGAGTTTCTACTACATAGCTACGATAAGAAAAGAAAAATTCACGGG
ATAAAAAAGGAGCAAGCCAAGAAAAAGTTCAGAGGCAACTGCTATAATTGTAGAAAAGCTGGTCACAAAGCTCCCAAAGAAGGACTGATA
AGGACAAGAGCAAGAGTCACATAAACATGGTGGAAAAGATTGAGGATGTGGATGACCTCTGTGTTATGATATAGGAGTGCAACTGGGTTG
GAAACCCAAAGAAATGATTTCTTGGTCTCTGGTACTACTCAACATGTTTGTTCTGTAAAAAAAAAAAGCATATGCAAGCTACACTCCCGT
TGAATTCGATAAAGAGTTTTTCATGAAAAATACTGCAACCGCGCCAAGATTGAAGGATGTTGAAAGGTACTTTTGATGACTTCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TBSK	Tuber Skin	4812	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E562433
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P235074 (62 Aa)

HRGHPHPQSFPPCLCDSCSCPYQSFFGSFVTSFSTIIAVASELFLGLLLFYPVNFSFLIVAM

SignalP predicts non-secretion with a score of 0.226

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P91140 (144 Aa)

LQVDISREPGXRYVIRVSTTSYDKKRKIHGIKKEQAKKKFRGNCYNCRKAGHKAPKEGXDKDKSKSHINMVEKIEDVDDLCVMIWSATGL
ETQRNDFLVSGTTQHVCSEKKKAYASYTPVEFDKEFFMKNTATAPRLKDVERYF

SignalP predicts non-secretion with a score of 0.042

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	623	PC4	30
2	51643		1
5	93638		1
1.1	101505	SWIB/MDM2 - Cellular Component: nucleus (GO:0005634)	97

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U268036	Solanum tuberosum #3

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