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Unigene SGN-U293087

Unigene Basic Information

Unigene ID:	SGN-U293087
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	293087
mRNA sequence:	Length: 392 bp

>SGN-U293087 Solanum tuberosum #4 (1 members)
GATGCTCTTGTGCAGAAGCTACAATGTCTACTCTGATTGCAAGAGGCTGTTGTCACAGAACCTGTAAGGCCTAGTAGTTTGCGCAGAGAG
TTCTCATTGAGTAAAGGACTTGAGGATTCTTACATTGATGCTCTTGTGCATAAGCTACTATAGTAATTGCAAGAGACAGTTTCCACTGTT
CGAACTTGTAAGGCTATAACCTTTTAGTCAGTCACATTTATAACCTTTTAGTAGTCACTTGACAACAACTTTATAAGTTACACGAGAGCA
TTAATATGTTAACTACATAAAAATGCTTATATGTTTCTTTCATCAAGTATGTTGGTTAAGGTTGGTTGTTTAAGTTCTTTCTTATTTCTA
TTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E617673
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P91330 (63 Aa)

DALXAEATMSTLLQEAVVTEPVRPSSLRREFSLSKGLEDSYIDALVHXATIVIARDSFHCSNL

SignalP predicts non-secretion with a score of 0.115

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P235283 (40 Aa)

ESSSPLLNENSLRKLLGLTGSVTTASCNQSRHCSFCTRAS

SignalP predicts non-secretion with a score of 0.181

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P235284 (40 Aa)

PYKFEQWKLSLAITIVAYAQEHQCKNPQVLYSMRTLCANY

SignalP predicts non-secretion with a score of 0.384

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	19593		1
2	51721		1
5	93736		1
1.1	101376	UDP-glucuronosyl/UDP-glucosyltransferase - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity transferring hexosyl groups (GO:0016758)	505

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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