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Unigene SGN-U294040

Unigene Basic Information

Unigene ID:	SGN-U294040
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	294040
mRNA sequence:	Length: 315 bp

>SGN-U294040 Solanum tuberosum #4 (1 members)
ATGGCGGCATCTTCTCCTCTTGCTTCTACACTCCACGGGCTCCTCTTTCTACAATGCGTGGAGTTTCCGGCGGTCCTCCGGTTCGATTGC
CGGTCGGCAAACCCTAAGTCTCCGGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAATAGTACTGGTGGATAAAAGTGAAGGCTGAA
AACAGTTAATCGTCTGCAAAACGAAATTACCTCGACATACAGCATTGTGCCTATTGTTGCACAGGCAAGCAATTCAGTTACACCAATATT
CTTCAGGTTCCGAAGGTCCAAAAGATTGTGGCTAAATTGTGGTAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E582285
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P236267 (88 Aa)

IPQFSHNLLDLRNLKNIGVTELLACATIGTMLYVEVISFCRRLTVFSLHFYPPVLLLKLSPSIYWTTRRLRVCRPAIEPEDRRKLHAL

SignalP predicts non-secretion with a score of 0.155

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P92212 (106 Aa)

MAASSPLAXYTPRAPLSTMRGVSGGPPVRLPVGKPXVSGSSNKLTVKASAIVLVDKSEXLKTVNRLQNEITSTYSIVPIVAQASNSVTPX
ILQVPKVQKIVAKLWY

SignalP predicts non-secretion with a score of 0.137

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	520	Ribosomal_L5 Ribosomal_L5_mit	34
2	52057		1
5	94166		1
1.1	101834	Mitochondrial ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	34
2	122538	Ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Mitochondrial ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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