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Unigene SGN-U295266

Unigene Basic Information

Unigene ID:	SGN-U295266
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	295266
mRNA sequence:	Length: 447 bp

>SGN-U295266 Solanum tuberosum #4 (1 members)
CAAAGAAAAATCATCCCCTTGATAGATTTGTAAAGTAACATGAAACTGTGATTTACATGATTACTATAATTAATTTTCTTGAAACATATG
AAACTATATATATTTATTTATTTTCGTATTCAATCTATTTGAAGCTTGTTCATATAGGAGCAAGATGATCTTCTTTAGTCAATTTATTTT
GCATCCACCTCTGAAGCATTTCCAGTGCTGCTTTGGGCTGATCCATTGGTACCATATGGCCTGCATCATGGACCTTGAGGAAAGTTAAAG
GCCCATGGTTCTTTTCAACTCCTTTCTCTACACCATCTACTGTAAAAGAAACTAATGGGGCTTTTCCAAAGGCATTTTGCCCTGACCATT
TCATTGCATGGACCCATCTTGAATTCCCGAGCCAATTGCAGATAAGGTCGTATTCCCCTGCATATATAAGTAGCTTGATACCATCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E420101
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255577428\|ref\|XP_002529593.1\|	162	2e-38	77.66	282 bp (63.1%)	-2
Description:	Serine carboxypeptidase, putative [Ricinus communis] >gi223530926\|gb\|EEF32785.1\| Serine carboxy…
arabidopsis	blastx	At5G22980.1	155	9e-39	77.17	276 bp (61.7%)	-2
Description:	Symbols: SCPL47 \| SCPL47 (serine carboxypeptidase-like 47); serine carboxypeptidase \| chr5:768…
swissprot	blastx	Q9FFB0	155	9e-38	77.17	276 bp (61.7%)	-2
Description:	Serine carboxypeptidase-like 47 OS=Arabidopsis thaliana GN=SCPL47 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93350 (101 Aa)

DGIKLLIYAGEYDLICNWLGNSRWVHAMKWSGQNAFGKAPLVSFTVDGVEKGVEKNHGPLTFLKVHDAGHMVPMDQPKAALEMLQRWMQN
KLTKEDHLAPI

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P237517 (101 Aa)

DGIKLLIYAGEYDLICNWLGNSRWVHAMKWSGQNAFGKAPLVSFTVDGVEKGVEKNHGPLTFLKVHDAGHMVPMDQPKAALEMLQRWMQN
KLTKEDHLAPI

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	54	Peptidase_S10	225
2	21994	Peptidase_S10	219
5	56820	Peptidase_S10 Ser_estrs	22
1.1	101427	Peptidase S10 serine carboxypeptidase - Molecular Function: serine carboxypeptidase activity (GO:0004185) - Biological Process: proteolysis (GO:0006508)	193
2	118433	Peptidase S10 serine carboxypeptidase - Molecular Function: serine carboxypeptidase activity (GO:0004185) - Biological Process: proteolysis (GO:0006508)	192
5	129360	Peptidase S10 serine carboxypeptidase - Molecular Function: serine carboxypeptidase activity (GO:0004185) - Biological Process: proteolysis (GO:0006508) Esterase/lipase/thioesterase - Molecular Function: catalytic activity (GO:0003824)	24

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U267047	Solanum tuberosum #3

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