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Unigene SGN-U296604

Unigene Basic Information

Unigene ID:	SGN-U296604
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	296604
mRNA sequence:	Length: 453 bp

>SGN-U296604 Solanum tuberosum #4 (1 members)
AATTTTTTTACCTCCCCCTGTTTAGTGAAAAGTTACAAACACCAACACAACATTACAAACACACTCCCCCCTCATCCAAAATAAAAACAT
CATAATAAATTAACACTTACACAAAAGTACAATTACAAAAGTAACAACAAGAAAATACAAATTACAATATATTTTTTTGGTCAATTAATG
TCTCTTAAGAGCAATAGCAGACAACACAATCAAGATAAGCAAAAGCACAATTGTGATAAAAGCAGCCACAACAGCTCCACTAGTTGTTTG
GCAAAAATCACCAAATTGGTTACAAAATGCAAGCCAATTAGCATCTTGGTTACCATTGTGTGCTAAGTATACTATGGCTGTTGATGCCCC
TGCTGCTGATGTTGTCAATGTGATAATGGCCGTGTCAAAAATAATGAGAAGTAGTCTTGGAGCAACGACATGAGAGCGTGCAATGCACAC
TAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E435233
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|288559157\|sp\|C6T1K6.1\|U4974_SOYBN	78.2	3e-13	66.67	198 bp (43.7%)	-3
Description:	RecName: Full=UPF0497 membrane protein 4 >gi255630202\|gb\|ACU15456.1\| unknown [Glycine max]
arabidopsis	blastx	At5G06200.1	69.3	9e-13	63.64	198 bp (43.7%)	-3
Description:	integral membrane family protein \| chr5:1877334-1878117 FORWARD
swissprot	blastx	C6T1K6	78.2	2e-14	66.67	198 bp (43.7%)	-3
Description:	UPF0497 membrane protein 4 OS=Glycine max PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P238890 (92 Aa)

IVCIARSHVVAPRLLLIIFDTAIITLTTSAAGASTAIVYLAHNGNQDANWLAFCNQFGDFCQTTSGAVVAAFITIVLLLILIVLSAIALK
RH

SignalP predicts secretion with a score of 0.647

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P94581 (92 Aa)

IVCIARSHVVAPRLLLIIFDTAIITLTTSAAGASTAIVYLAHNGNQDANWLAFCNQFGDFCQTTSGAVVAAFITIVLLLILIVLSAIALK
RH

SignalP predicts secretion with a score of 0.647

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	160	DUF588	87
2	22611	DUF_A_thal_1569 DUF588	24
5	57866	DUF_A_thal_1569 DUF588	11
1.1	101528	Protein of unknown function DUF588	85
2	118892	Conserved hypothetical protein CHP1569 integral membrane plant Protein of unknown function DUF588	26
5	130220	Conserved hypothetical protein CHP1569 integral membrane plant Protein of unknown function DUF588	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262875	Solanum tuberosum #3

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