Sol Genomics Network

Unigene SGN-U298919

Unigene Basic Information

Unigene ID:	SGN-U298919
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	298919
mRNA sequence:	Length: 1406 bp

>SGN-U298919 Solanum tuberosum #4 (1 members)
GCTCTTTCTTCTTCCTCTCTAATACCCAAAACACCATAGAAAATGCATAAATTATTTGCAGTAAGGTCCTTAAGTTCTGCCATAGCCAAA
AACTTCAAGTCCCTACAAAATCAACAAGCTGCTTTTTCTACTTCATTACTATTGGATGATACTCAAAAACAGTTTAAAGAAAGTGTAGCA
AAATTTGCTCAAGAGAATATAGCTCCTTATGCTGAAAAGATTGACAGAACAAACAGTTTCCCAAAGGAGATTAACTTATGGAAATTGATG
GGGGACTTTAATTTGCATGGAATTACTGCACCAGAGGAATATGGTGGTCTCAACCTTGGATATTTATATCACTGCATTGCCTTAGAAGAA
ATTAGTCGTGCATCTGGTGCTGTTGCTGTTTCCTATGGTGTTCAATCCAACGTTTGCATCAACCAATTGGTGAGAAATGGAACCCCTGAC
CAGAAGCAAAAATATTTACCAAAGCTTATAAGTGGGGATCACATTGGGGCTCTAGCCATGAGTGAACCAAATGCTGGGTCAGATGTTGTT
AGCATGAAGTGTCGAGCCGATCGTGTCGATGGTGGCTATGTTTTAAATGGAAATAAAATGTGGTGCACCAATGGTCCTGTCGCTAATACT
TTGATTGTTTATGCAAAAACGGATACGACTGCTGGTTCAAAAGGAATTACAGCATTTATCATCGAAAAAGAAATGCCAGGATTCTCAACT
GCACAGAAATTGGACAAACTTGGGATGCGAGGAAGCGATACGTGTGAACTTGTATTCGAGAATTGCTTTGTTCCTAAAGAAAATGTTCTA
GGGCAGGAAGGAAAAGGAGTGTATGTTCTAATGTCGGGGCTAGATTTAGAACGACTTGTTTTAGCAGCAGGACCAGTTGGAATAATGCAG
GCATGTATGGATATTGTTATTCCTTACGTTCGACAAAGGGAGCAATTTGGAAGACCAATCGGCGAATTTCAACTTATACAGGGAAAACTC
GCTGACATGTATACTGCTTTACAATCTTCAAGATCATATGTGTATGCTGTTGCAAAGGATTGTGACAACGGGAAGATTGATCCAAAGGAT
TGTTCTGGGACCATACTACTTGCAGCTGAAAGAGCTACTCAAGTTGCTCTTCAGGCAATTCAATGTCTAGGTGGAAATGGATATATAAAT
GAATATCCAACAGGACGTTTACTAAGAGATGCCAAAATGTATGAGATTGCAGCAGGAACAAGTGAAATAAGAAGACTTGTAATTGGTCGT
GAGCTCTTTAAACATCAATAAGTAATTACAAATTATAATTAATTAGGGGATCCTACATTATTTAATTTCTTCTTATATCCCCAAAAAATT
GTATGTTTAATCAATAAATTATATATTCACGTAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ivd1	isovaleryl-CoA dehydrogenase; ivd1 gene

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E624186
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	251	Acyl-CoA_dh_M Acyl-CoA_dh_C	62
2	24591	Acyl-CoA_dh_M Acyl-CoA_dh Acyl-CoA_dh_N Acyl-CoA_dh_C	8
5	58624	Acyl-CoA_dh_M Acyl-CoA_dh Acyl-CoA_dh_N Acyl-CoA_dh_C	8
1.1	101614	Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase C-terminal-like	58
2	120769	Acyl-CoA dehydrogenase N-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	8
5	131024	Acyl-CoA dehydrogenase N-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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