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This unigene is from an out-of-date build, Coffea canephora #1
It has been superseded by SGN-U614360 in the current build, Coffea canephora #3

Unigene SGN-U305651

Unigene Basic Information

Unigene ID:	SGN-U305651
Unigene Build:	Coffea canephora #1
Date:	2005-04-24
Organism:	C.canephora
Alternative ID:	127980
mRNA sequence:	Length: 129 bp

>SGN-U305651 Coffea canephora #1 (1 members)
ATTGTTGAGGGTGTACTGACCCACCAAATGAAGCAGTTTGTTATTGATGGCAATAAAGTTGTGCTGAATGTGTCCCGCCCTGAAATGAGA
GTAAATGATGCGCATTTTGAGGAGAATGAGGTTTATGCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccs46w	Endosperm and perisperm 46 week after pollination	10903	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E670657
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|55168203\|gb\|AAV44069.1\|	249.6	4.5e-65	72.16	528 bp (409.3%)	1
Description:	gi\|55168203\|gb\|AAV44069.1\| putative DNA-binding protein GBP16 [Oryza sativa (japonica cultivar-…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (1)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P107278 (206 Aa)

RAAEFGTRLNAPANTAAEVAFRLVLPGNNNQELPKANQKVAAAHHGTIVEGVLTHQMKQFVIDGNKVXAECVPPEMRVNDAHFEENEVYA
IDIVTSTDDGKPNLLDENQTTIYKIAVHKNYNLNMNPSKFLFLEISQNFPIMPLPARHLEQKRARLGLENDPTXDLQQPYPVSHKKPGDF
PAHIKFTVLLLPDGSDRITSHSLQEL

SignalP predicts non-secretion with a score of 0.122

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	714	Pept_M24_MAP Pept_M24A_MAP1 Peptidase_M24 Pept_M24_nph Pept_M24A_MAP2	26
2	23352	Pept_M24_MAP Pept_M24A_MAP1 Peptidase_M24 Pept_M24_nph Pept_M24A_MAP2	13
5	57449	Pept_M24_MAP Pept_M24A_MAP1 Peptidase_M24 Pept_M24_nph Pept_M24A_MAP2	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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