Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578846 in the current build, Tomato 200607 #2

Unigene SGN-U312681

Unigene Basic Information

Unigene ID:	SGN-U312681
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312681
mRNA sequence:	Length: 3158 bp

>SGN-U312681 Tomato 200607 #1 (29 members)
AGAGTTCATTATTTTTTTTGCATTTTGAAAAAGAAGAAAAAAATAAAGTTAAAGGGGGGGGGAAAAAGTTTTCATTTTGCCTTAAAAAGG
CACAATCTTGATAGAAAAGGAGATAATTTTACATGGGTTGTACGCTTATACTAATGTTGAATGTGTTGTTGGTGTTGTTGGGTTCATGGG
TTTTTTCTGGAACAGCTTCTGTTTCATATGACCATAGGGCTATTATTGTAAATGGACAAAGAAGAATACTTATTTCTGGTTCTGTTCATT
ATCCAAGAAGCACTCCTGAGATGTGGCCAGGTATTATTCAAAAGGCTAAAGAAGGAGGTGTGGATGTGATTCAGACTTATGTTTTCTGGA
ATGGACATGAGCCTCAACAAGGGAAATATTATTTTGAAGGGAGATATGATTTAGTGAAGTTTATTAAGCTGGTGCACCAAGCAGGACTTT
ATGTCCATCTTAGAGTTGGACCTTATGCTTGTGCTGAATGGAATTTTGGGGGCTTTCCTGTTTGGCTGAAATATGTTCCAGGTATCAGTT
TCAGAACAGATAATGGACCTTTCAAGGCTGCAATGCAAAAATTTACTGCCAAGATTGTCAATATGATGAAAGCGGAACGTTTGTATGAAA
CTCAAGGGGGGCCAATAATTTTATCTCAGATTGAGAATGAATATGGACCCATGGAATGGGAACTGGGAGCACCAGGTAAATCTTACGCAC
AGTGGGCCGCCAAAATGGCTGTGGGTCTTGACACTGGTGTCCCATGGGTTATGTGCAAGCAAGACGATGCCCCTGATCCTATTATAAATG
CTTGCAATGGCTTCTACTGTGACTACTTTTCTCCAAACAAGGCTTATAAACCAAAGATATGGACTGAAGCCTGGACTGCATGGTTTACTG
GTTTTGGAAATCCAGTTCCTTACCGTCCTGCTGAGGACTTGGCATTTTCTGTTGCAAAATTTATACAGAAGGGAGGTTCCTTCATCAATT
ATTACATGTATCATGGAGGAACAAACTTTGGACGGACTGCTGGTGGTCCATTTATTGCTACTAGTTATGACTATGATGCACCACTTGATG
AATATGGATTATTGCGACAACCAAAATGGGGTCACCTGAAAGATCTGCATAGAGCAATAAAGCTTTGTGAACCAGCTTTAGTCTCTGGAG
ATCCAGCTGTGACAGCACTTGGACACCAGCAGGAGGCCCATGTTTTTAGGAAGGCTGGCTCTTGTGCTGCATTCCTTGCTAACTACGACC
AACACTCTTTTGCTACTGTGTCATTTGCAAACAGGCATTACAACTTGCCACCATGGTCAATCAGCATTCTTCCCGACTGCAAGAACACTG
TATTTAATACAGCACGGATCGGTGCTCAAAGTGCTCAGATGAAGATGACTCCAGTCAGCAGAGGATTGCCCTGGCAGTCATTCAATGAAG
AGACATCATCTTATGAAGACAGTAGTTTTACAGTTGTTGGGCTATTGGAACAGATAAATACAACAAGAGACGTGTCTGATTATTTGTGGT
ATTCAACAGATGTCAAGATTGATTCAAGAGAAAAGTTTTTGAGAGGCGGAAAATGGCCTTGGCTTACGATCATGTCAGCTGGGCATGCAT
TGCATGTTTTTGTGAATGGTCAATTAGCAGGAACTGCATATGGAAGTTTAGAAAAACCGAAACTAACTTTCAGTAAAGCCGTAAATCTGA
GAGCAGGTGTTAACAAGATTTCTCTACTGAGCATTGCTGTTGGCCTTCCGAATATCGGCCCACATTTTGAGACATGGAATGCTGGTGTTC
TTGGGCCAGTCTCACTAACTGGTCTTGACGAGGGGAAAAGAGATTTAACATGGCAGAAATGGTCTTACAAGGTTGGTCTAAAAGGAGAAG
CCTTGAGCCTCCATTCACTCAGTGGTAGCTCGTCAGTTGAGTGGGTCGAGGGTTCTTTAGTGGCTCAGAGACAGCCACTCACATGGTACA
AGAGCACTTTTAATGCTCCAGCTGGAAATGATCCTTTGGCTTTAGACTTGAATACCATGGGCAAAGGACAAGTGTGGATAAATGGTCAAA
GCCTCGGACGCTATTGGCCTGGATATAAAGCATCTGGTAACTGCGGTGCCTGTAACTATGCAGGCTGGTTTAATGAGAAAAAATGCCTAA
GTAACTGTGGAGAGGCTTCACAACGATGGTATCATGTTCCCCGTTCTTGGCTGTATCCTACTGGAAATTTGTTAGTTCTATTTGAGGAAT
GGGGAGGAGAGCCTCATGGAATCTCTTTGGTAAAAAGAGAAGTTGCAAGTGTTTGTGCAGATATAAACGAATGGCAACCACAGTTGGTGA
ATTGGCAAATGCAAGCATCTGGTAAAGTTGACAAACCACTGAGACCTAAAGCTCACCTCTCGTGTGCTTCTGGTCAGAAGATTACTTCAA
TCAAATTTGCAAGCTTTGGAACACCACAAGGGGTCTGCGGAAGCTTCCGTGAAGGAAGCTGCCACGCCTTCCACTCATATGATGCTTTTG
AAAGGTATTGCATCGGGCAAAACTCGTGCTCAGTACCTGTAACACCAGAGATCTTTGGAGGTGATCCATGTCCACATGTTATGAAGAAAC
TCTCAGTTGAGGTTATTTGCAGTTGATGACACTGAGGAGAAACAAATAAAAGTGGTTTCAGTTAGTTGTCTGAACATATCAAAAAGTTGG
CTTTGATGGAGGTGAAGTTGTACAGATATGCAACACACCTTTCCATTTGAGGCACATATGAATTGCAATGGCCCAAGATTCTGTACATAT
ATGTTGGTTACTGTCAAGTTGGTATTGGTTTGCAAATGTAAAACAGTAGTATAGTCATTGGTTCAAGTGCGCATCGAGATTGTGCTAGTG
GGAGGTAGCAGGTACCGATCGATCGATCGTTGTTTGCACAAGCTGGGCCTAGATTCCACTATTATTATAACAAAGAAAGCACAATGAGAC
TGATTCTTGATTAGTCCATGTGTAGATATTGTTACTGTTGGAATTTGCAAATCTTGTGATTTCAGCATTTTAATACTCTTTATCTTATAG
TAAAAATAGCAATCTTTCATTGCTTTGTACCTGCCAAAATGCTTACTACTATTGATGTGAAATAACATCAAATTCTCTTCAAAAAAAAAA
AAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TBG3	beta-galactosidase 3

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P115508 (837 Aa)

MGCTLILMLNVLLVLLGSWVFSGTASVSYDHRAIIVNGQRRILISGSVHYPRSTPEMWPGIIQKAKEGGVDVIQTYVFWNGHEPQQGKYY
FEGRYDLVKFIKLVHQAGLYVHLRVGPYACAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQKFTAKIVNMMKAERLYETQGGPIILSQI
ENEYGPMEWELGAPGKSYAQWAAKMAVGLDTGVPWVMCKQDDAPDPIINACNGFYCDYFSPNKAYKPKIWTEAWTAWFTGFGNPVPYRPA
EDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPAVTALGHQQ
EAHVFRKAGSCAAFLANYDQHSFATVSFANRHYNLPPWSISILPDCKNTVFNTARIGAQSAQMKMTPVSRGLPWQSFNEETSSYEDSSFT
VVGLLEQINTTRDVSDYLWYSTDVKIDSREKFLRGGKWPWLTIMSAGHALHVFVNGQLAGTAYGSLEKPKLTFSKAVNLRAGVNKISLLS
IAVGLPNIGPHFETWNAGVLGPVSLTGLDEGKRDLTWQKWSYKVGLKGEALSLHSLSGSSSVEWVEGSLVAQRQPLTWYKSTFNAPAGND
PLALDLNTMGKGQVWINGQSLGRYWPGYKASGNCGACNYAGWFNEKKCLSNCGEASQRWYHVPRSWLYPTGNLLVLFEEWGGEPHGISLV
KREVASVCADINEWQPQLVNWQMQASGKVDKPLRPKAHLSCASGQKITSIKFASFGTPQGVCGSFREGSCHAFHSYDAFERYCIGQNSCS
VPVTPEIFGGDPCPHVMKKLSVEVICS

SignalP predicts secretion with a score of 0.751

IPR001093 IMP dehydrogenase/GMP reductase
IPR001944 Glycoside hydrolase, family 35
IPR000922 D-galactoside/L-rhamnose binding SUEL lectin

Prediction based on longest six frame method

>SGN-P241859 (839 Aa)

FYMGCTLILMLNVLLVLLGSWVFSGTASVSYDHRAIIVNGQRRILISGSVHYPRSTPEMWPGIIQKAKEGGVDVIQTYVFWNGHEPQQGK
YYFEGRYDLVKFIKLVHQAGLYVHLRVGPYACAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQKFTAKIVNMMKAERLYETQGGPIILS
QIENEYGPMEWELGAPGKSYAQWAAKMAVGLDTGVPWVMCKQDDAPDPIINACNGFYCDYFSPNKAYKPKIWTEAWTAWFTGFGNPVPYR
PAEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPAVTALGH
QQEAHVFRKAGSCAAFLANYDQHSFATVSFANRHYNLPPWSISILPDCKNTVFNTARIGAQSAQMKMTPVSRGLPWQSFNEETSSYEDSS
FTVVGLLEQINTTRDVSDYLWYSTDVKIDSREKFLRGGKWPWLTIMSAGHALHVFVNGQLAGTAYGSLEKPKLTFSKAVNLRAGVNKISL
LSIAVGLPNIGPHFETWNAGVLGPVSLTGLDEGKRDLTWQKWSYKVGLKGEALSLHSLSGSSSVEWVEGSLVAQRQPLTWYKSTFNAPAG
NDPLALDLNTMGKGQVWINGQSLGRYWPGYKASGNCGACNYAGWFNEKKCLSNCGEASQRWYHVPRSWLYPTGNLLVLFEEWGGEPHGIS
LVKREVASVCADINEWQPQLVNWQMQASGKVDKPLRPKAHLSCASGQKITSIKFASFGTPQGVCGSFREGSCHAFHSYDAFERYCIGQNS
CSVPVTPEIFGGDPCPHVMKKLSVEVICS

SignalP predicts secretion with a score of 0.734

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101518	Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	90
2	118505	Galactose-binding like Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	76
5	128994	Galactose-binding like Glycoside hydrolase family 35 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	74

Preceding Unigenes (2)

Unigene	Build
SGN-U216244	Lycopersicon Combined #3
SGN-U225886	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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Event Web URL: