Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583843 in the current build, Tomato 200607 #2

Unigene SGN-U312934

Unigene Basic Information

Unigene ID:	SGN-U312934
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312934
mRNA sequence:	Length: 1966 bp

>SGN-U312934 Tomato 200607 #1 (32 members)
GATCTTCTTTTTACAAGAATTAGCAAATATCCATTTCAATTTTTTTTGAGAATCTTTGGTTCTTTCTTTTTTTGAAAATTAAGATGGTGT
CTATTTCAAAGAATAACCAAAAACAACAACTTCTTTCAAAGATAGCTACAAATGATGGTCATGGGGAAAATTCACCTTATTTTGATGGTT
GGAAGGCTTATGCAAATAATCCTTTTCATCTAACTGATAATCCTACTGGTGTTATTCAGATGGGTCTGGCTGAAAATCAGCTTTGTTTTG
ATTTAATCCAAGAATGGGTGGTGAATAATCCAAAAGCATCAATTTGCACTGTTGAAGGAGCTGAAAATTTCCAAGATATTGCAATTTTTC
AAGATTATCATGGCTTGCCAGAGTTTAGACAAGCAGTTGCAAGGTTTATGGAGAAAGTGAGAGGTGACAGAGTTACATTTGATCCAAACA
GAATAGTAATGAGTGGAGGAGCAACTGGTGCTCATGAAATGCTTGCTTTTTGTTTGGCTGATCCTGGTGATGCCTTTTTGGTCCCAACAC
CATATTATCCAGGATTTGATAGAGATTTGAGATGGAGAACTGGTGTTCAACTATTTCCAGTTGTTTGTGAAAGTTGTAATGATTTCAAAG
TGACTACAAAAGCCTTGGAAGAAGCATATGAAAAAGCTCAACAATCCAACATCAAAATAAAAGGCTTACTTATAAACAACCCTTCAAATC
CATTAGGTACTCTTCTTGACAAGGACACACTCCGTGACATTGTAACGTTCATCAACTCGAAAAACATCCATTTAGTATGCGATGAAATCT
ATGCTGCTACGGTGTTTGATCAGCCTAGATTCATCAGTGTATCTGAAATAGTTGAGGATATGATTGAATGCAACAAAGATTTGATCCATA
TAGTCTATAGCTTGTCTAAAGACTTGGGATTTCCAGGATTCAGAGTTGGAATTGTTTACTCGTACAACGATACAGTAGTAAACATTGCTA
GAAAGATGTCAAGCTTTGGGTTAGTTTCAACTCAGACACAACATTTGCTTGCATCAATGTTGTCTGATGAAGTATTCATTGACAAATTCA
TTGCTGAGAGTTCCGAAAGACTCGGAGAAAGGCAGGGGATGTTTACAAAAGGACTAGCAGAAGTTGGAATTAGTACATTGAAAAGCAATG
CTGGTTTGTTTTTCTGGATGGATTTAAGGAGGCTTCTTAAAGAAGCAACATTTGATAGTGAGTTAGAATTATGGAGAATTATTATCAATG
AAGTGAAACTTAATGTTTCACCAGGATGTTCATTTCATTGTTCTGAACCTGGTTGGTTTAGAGTTTGTTTTGCAAACATGGATGACGAGA
CGATGAGGATTGCATTAAAAAGGATAAGTTACTTTGTGCTTCAGCCAAAGGGACTTAACAACATTGCTGCTATTAAGAAACAATGCAGCA
GGAGGAAACTTCAGATCAGCTTATCGTTTCGAAGATTGGATCATGAGTTCATGAACTCACCAGCTCACTCTCCGATGAATTCGCCTTTGG
TCAGGACTTAAAGAAGGGGGAAAATGGTATAGTTATGTTTTTGTTGTTTGTCTAATAAAAGAAGGTAAAAAAATATTTCCTTTTGTTGTA
GTGATGAGTGATAGTACTAAGTATTTGATTTCACAGTTAATTCTATTTTTGTGCAAACTGATGAAAGAAAATAAAAAAGATATAAGGTAT
AGAGAGTGTTTTGGATTTTTAATATCTGAAATTTTTCCTATTATCCCATCAATATTGTATCAAAATGGGATTCACTGTGGAATTTGTATT
TCTTCTTGGTTTTTTTAATTCCTTCTTGAAAATGAAGGAGGGTGTAAGTTGTAACCTGAAATTTTACTTGCTTATATATATAAAAAAAAT
TCATGTCCTTGAAAAAAAAAAAAAAAGAAAAAAAAAACCCCGGGGGGGGGGCCGGGCCCCCTTTCCCCCCAAAAGG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
acs1a	1-aminocyclopropane-1-carboxylate synthase 1A	1-aminocyclopropane-1-carboxylate synthase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	vSlycmRNA		8362	4

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101453	Aminotransferase class I and II - Biological Process: biosynthesis (GO:0009058) - Molecular Function: transferase activity transferring nitrogenous groups (GO:0016769)	139
2	118685	Aminotransferase class I and II - Biological Process: biosynthesis (GO:0009058) - Molecular Function: transferase activity transferring nitrogenous groups (GO:0016769) 1-aminocyclopropane-1-carboxylate synthase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847)	35
5	129149	Aminotransferase class I and II - Biological Process: biosynthesis (GO:0009058) - Molecular Function: transferase activity transferring nitrogenous groups (GO:0016769) 1-aminocyclopropane-1-carboxylate synthase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847)	35

Preceding Unigenes (2)

Unigene	Build
SGN-U213522	Lycopersicon Combined #3
SGN-U213525	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: