Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U571925 and SGN-U571928 in the current build, Tomato 200607 #2

Unigene SGN-U313200

Unigene Basic Information

Unigene ID:	SGN-U313200
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313200
mRNA sequence:	Length: 1106 bp

>SGN-U313200 Tomato 200607 #1 (19 members)
TTTTTTCCTCTATTCTCTTTCTCTCTTTACTTTTTCTTCTTTGTGTACCAAAAAGAAAATAAAAATAAAAATGAACAGAGAGCATTGAAC
AAACACTCTATCAAAAAGCCATAGCTATGGAGTTTCAGGACCACTTTTCTCAAGAAATGGTTCTTCATCAACAACTGCAACAACTGCTAC
AAAGCTTAACAGGGGTAGCACCAGGTGAAGGTACAGGAGCAACCATGTCTGATGATGATGATGACCAGGCTGATAGTGACACAAACTTTT
TGGATGGAGGTTTTGATGGACCAGATAGCATGGGATTTGGTCCTCTTGTACCTACTGAAAGTGAAAGGTCCCTGATGGAGCGTGTTAGGC
AAGAACTCAAGCATGAACTCAAACAGGGTTATAAGGAAAAAATTGTTGACATTAGAGAGGAAATTTTACGCAAAAGAAGAGCAGGAAAAC
TGCCTGGTGATACTACATCTGTGTTGAAAGCTTGGTGGCAATCACATTCTAAGTGGCCTTATCCAACTGAGGAAGACAAAGCACGATTAG
TGCAAGAAACAGGTTTACAACTGAAGCAGATAAACAATTGGTTTATTAACCAAAGGAAAAGGAACTGGCACAGCAATCCATCAACGTCTT
CTTCTCAGAAAAGCAAACGCAAGAGTGCAGGTGAAATCAAGCAGTAAAAAAAAGACATGATGAAGAAGAAAATGAAATTTTTGTGTTCTA
GCAAAGCATAAAGATTCATCACAAAACAAAAAACATGAATGGCTAGAATTTGGGAAATTGAATTAATGAGTTTTTGGCTGTGTGAAGTAA
TTGACCACAGAAAGTTCCCAAGCTGACCTGGTTGACTAAGATATGCTTTAGAAAAAAAGAGAGTATAGATACTTGTGAAAGTAATACTAG
CACTTTCTTATTTTTATGAGGTTAATTTTCTATGTTTTAAGCCAAATATTTTAGGACAACAGGTTTCAGTTTTTATAATTTTTGTTTTGT
ATCAAGTATTTTGGTGGCTATGTTGTAATTTTGAATTCTAGTGTTACTCATTTTTGTGAATAGAAGTTGTAGATTATAATTAAAAAAAAA
AAAAAAAAAAACTCGAGACTAGTTCT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
LeT12	class II knotted-like homeodomain protein

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (4)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101481	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	108
2	118653	KNOX1 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) KNOX2 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like ELK - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	39
5	129409	KNOX1 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) KNOX2 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like ELK - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U213224	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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