Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577950 and SGN-U578128 in the current build, Tomato 200607 #2

Unigene SGN-U313465

Unigene Basic Information

Unigene ID:	SGN-U313465
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313465
mRNA sequence:	Length: 1525 bp

>SGN-U313465 Tomato 200607 #1 (56 members)
ATAGGGCGATTGGCGGCCAATCGGCCGAATTGAAACAGAGAAACACCACTTCACACCCTTCTTTTTTTTTCTTCCGTCTGTCTCCATTTG
ATATGATATATATATTACAACAACAATTATTCATAGTATAGAAAAAATATCCGAAAAAATGGGAAGAGGAAGAGTCCAGTTGAAGCGAAT
AGAGAACAAAATTAACCGTCAAGTTACCTTCTCGAAACGTCGATCTGGTTTGCTGAAGAAAGCCCATGAGATCTCTGTGCTTTGTGATGC
TGAGGTTGGTTTGATTGTTTTTTCTACTAAAGGAAAACTCTTTGAATATGCCAACGATTCCTGCATGGAGAGGATACTTGAAAGATATGA
AAGATACTCATTTGCTGAGAAACAGCTTGTTCCTACTGATCATACCTCCCCGGTAAGCTGGACCCTTGAACATGCAAAACTTAAGGCCAG
ACTTGAGGTTCTGCAGAGGAACCAAAAGCATTATGTGGGAGAAGATTTGGAGTCCTTAAGTATGAAGGAACTTCAGAATCTGGAGCACCA
GCTTGATTCAGCTCTTAAACACATTCGATCAAGAAAGAATCAATTGATGCATGAGTCCATTTCTGTGCTTCAAAAAAAGGACAGAGCATT
GCAGGAGCAAAACAACCAGCTTTCGAAGAAGGTGAAGGAGAGGGAGAAAGAGGTGGCACAGCAAAATCAGTGGGAAATCAACTCATCTTC
ATTTGTTTTGCCACAACAACTGGACTCTCCTCACCTTGGGGAAGCATACCAGAGTACTAATGTAATAGATAATGGGGAAGTGGAAGGAGG
TAGTTCTTCACAGCAGCAAGGTGCAGCTAATAATACTGTGATGCCACAATGGATGCTTCGTCATCTTAATAATTAAAAGGTATCATTAAT
ACTTCAATATAATTAACTAGGTATATAATTTTGATGCCACAATATATTAATTAAAAGGTATCATTAATACTTCAATATAATTAACTAGGT
ATATAATTTTGATGCCACAATATATTGTCTATGTGTACTTGCTTTCAAAGACATGCCACAATATAGATGGATTGTTGTAAAAACATTATA
ATATATGTTAAAAATAAATTTTGATGTAAAAAAAAAAAAAAAAAAAGGATTTTGTAGTAATTATATAGTAATAACTTTTATATTATATTT
AACGATAACAATAAATATGAATATTTATAATTAACACTTTACATAAGTGTTAAAGGATTTAGTAATTTTGAATGTAATATTATTAACTCA
TGTTGTGAGTATGTTGTTTTTATGATAGTTAGGAGATATGATAATATATATAACTTGATGAATGATTGATGAATAAATTTTTTAATTTAT
TCGAAAGATGCTTTTGGTTGGTTATAGGTTGTCAATTATTTATCCATAAAACTATTGTTCTATAGCATAAAATTAAATAGATATTACTTA
AAAGATATAAAACAAACGGACAAAAGACACTGCATTTTCTTTGTCATCTTTTCTTGATTGGTACTACCAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
fruitfull1	FRUITFULL-like MADS-box 1	MADS-domain protein

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	23
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (56)

Alignment image suppressed for unigene with 56 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (23)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U213659	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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