Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U576515 and SGN-U576519 in the current build, Tomato 200607 #2

Unigene SGN-U313521

Unigene Basic Information

Unigene ID:	SGN-U313521
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313521
mRNA sequence:	Length: 2016 bp

>SGN-U313521 Tomato 200607 #1 (79 members)
GAATTCCCATTGCAGTCTTGTATCTTCTTTCTTTTAATGGCTGCTTCAAGTTTCTCTTTTCCCACTTCATCTTCTTCATTCATGACGACT
TCTTTCACCGACCTTCTTGCTTCTGATGATTATCCAACCAAAGGACTTGCTGATAGAATTGCAGAGAGGACTGGTTCTGGAGTTCCTAAA
TTCAAATCTCTTCCACCTCCTTCACTTCCATTATCGCCTCCTCCTTTTTCGCCTTCCTCTTACTTTGCTATTCCTCCTGGTTTAAGTCCA
ACTGAACTTTTAGACTCCCCTGTTCTTTTGTCTTCTTCAAACCTTCTTCCATCTCCGACGACTGGGAGTTTTCCATCTCGTGCTTTTAAT
TGGAAGAGCAGTAGTCATCAGGATGTGAAACAGGAAGACAAAAACTACTCAGATTTTTCTTTCCAGCCTCAAGTAGGGACAGCTGCATCA
TCAATCTCTCAATCTCAAACTAACCATGTCCCTCTGGGGCAGCAAGCATGGAATTGTCAAGAGCCCACAAAACAGAATGATCAAAATGCT
AATGGAAGATCCGAATTCAACACTGTACAGAATTTTATGCAGAATAATAATGATCAGAACAATAGTGGAAACCAATACAATCAGAGTATA
AGGGAGCAGAAAAGGTCAGATGACGGATACAATTGGAGGAAATACGGGCAGAAACAAGTAAAAGGTAGTGAAAATCCGAGAAGCTACTAC
AAGTGTACATACCCAAATTGTCCCACCAAGAAGAAGGTTGAGAGATCTTTAGATGGTCAAATTACTGAAATTGTGTACAAGGGTAATCAC
AACCATCCAAAGCCTCAGTCTACCAGAAGATCGTCATCATCCACAGCTTCATCTGCATTCCAATCTTACAATACACAAACTAATGAAATT
CCAGATCATCAATCCTATGGTTCAAATGGACAAATGGATTCCGTTGCAACACCTGAGAATTCTTCGATTTCATTTGGGGATGATGATCAT
GAACACACTTCTCAAAAGAGTAGTAGGTCAAGAGGAGATGATCTTGATGAAGAGGAACCAGACTCAAAAAGATGGAAAAGAGAAAACGAA
AGTGAAGGTGTATCTGCACTAGGAGGGAGTAGGACAGTTAGAGAACCTAGAGTTGTAGTTCAAACTACGAGTGACATCGATATCCTAGAT
GATGGTTATAGATGGAGGAAGTATGGTCAAAAAGTAGTGAAAGGAAATCCTAATCCCAGGAGCTACTACAAATGCACAAGTACGGGATGT
CCAGTAAGAAAACATGTGGAAAGGGCATCACAAGACATAAGGTCAGTGATAACAACCTATGAAGGGAAGCACAACCATGATGTTCCAGCA
GCAAGGGGCAGTGGCAACCACTCAATTAACCGACCTATGGCACCGACCATAAGGCCTACTGTGACATCTCATCAATCCAACTATCAAGTT
CCATTACAAAGTATAAGGCCACAACAGTCTGAAATGGGAGCACCCTTTACACTAGAGATGTTGCAGAAGCCTAATAATTATGGTTTCTCA
GGATATGCAAATTCAGGGGATTCATATGAAAACCAAGTTCAGGACAATAATGTGTTTTCGAGAACTAAGGACGAGCCTCGAGATGACTTG
TTTATGGAGTCATTGCTTTGCTGAAACTGGAATCCTAGAAAGGAGCACGAATTGAAGTTTATGAAACGAAAAACTGAACCTTTTATTTAT
TTATTTTTGCATAAAGAATATGATAGGAAGCATTTTGATTTCATTTGTTAATAGATCATATACTGTTTTTTTTTTTTTGGTGTGTGTACA
TTTTGTACTAGGAAATTTGTTTGTTGTAAATTCAATCAAATGCGGTGTAGATGTTCATGCAGTTACCACTGTTATGGGGGTTATATAATT
TAGGATAGGAATGTAAATCCCCAACTCATGACTATATGACACTGATTCTTTATTTCTATCACATTTTCAAGTTTTATATATTAAAGAAGA
TTGCAGTTTTTCAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	15
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	37
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (79)

Alignment image suppressed for unigene with 79 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 6 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101416	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	230
2	118439	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	155
5	129011	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	68

Preceding Unigenes (1)

Unigene	Build
SGN-U213429	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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