Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580538 in the current build, Tomato 200607 #2

Unigene SGN-U313832

Unigene Basic Information

Unigene ID:	SGN-U313832
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313832
mRNA sequence:	Length: 2842 bp

>SGN-U313832 Tomato 200607 #1 (60 members)
TTTAGTTGGGGAGCTTTTCTCGATAATCGCCAAATTTCCATAAATTCAAATCAGTATATCATCGAAGAACACGACGAAAATCCGATGGCC
ACAAGCAAAACGACAGTTCAAATTCACGGAGATTGTGAAAATGATAAAGTGAAGTTACGTGGAGTAGTAGTTCAGTGAAGTAGTAGATAC
TGAGATCGCATTCTCCGTCGTCATTTTTCACATCGAAATAGTCGTGTAAAAAAAATGAAAAAATTGCTGCGAGACAGGTATGTGTCGCAG
CAGGAAATAGCATCTTAAAGGAAGGAAGGAAGGAAACTCGAAAGTTACTAAAAATTTTTGATTCTTTGGGACGAAACGAGATAATGGAAT
CCTGTGATTGCATTGAGGCTTTACTGCCAACTGGTGACCTGCTGGTTAAATACCAATACCTCTCAGATTTCTTCATTGCTGTAGCCTACT
TTTCCATTCCGTTGGAGCTTATTTATTTTGTCCACAAATCTGCATGCTTCCCATACAGATGGGTCCTCATGCAATTTGGTGCTTTTATTG
TGCTCTGTGGAGCAACACACTTTATTAGCTTGTGGACCTTCTTTATGCACTCTAAGACGGTCGCTGTGGTTATGACCATATCAAAAATGT
TGACAGCTGCCGTGTCCTGTATCACAGCTTTGATGCTTGTTCACATTATTCCTGATTTGCTAAGTGTTAAAACGCGAGAGTTGTTCTTGA
AAACTCGAGCTGAAGAGCTTGACAAGGAAATGGGCCTAATAATAAGACAAGAAGAAACTGGCAGACATGTCAGGATGCTGACTCATGAGA
TAAGAAGCACACTCGACAGACACACAATCTTGAAGACTACTCTTGTGGAGCTAGGTAGGACCTTAGACCTGGCAGAATGTGCTTTGTGGA
TGCCATGCCAAGGAGGCCTGACTTTGCAACTTTCCCATAATTTAAACAATCTAATACCTCTGGGATCTACTGTGCCAATTAATCTTCCTA
TTATCAATGAAATTTTTAGTAGCCCTGAAGCAATACAAATTCCACATACAAATCCTTTGGCAAGGATGAGGAATACTGTTGGTAGATATA
TTCCACCAGAAGTAGTTGCTGTTCGTGTACCGCTTTTACACCTCTCAAATTTTACTAATGACTGGGCTGAACTGTCTACTAGAAGTTATG
CGGTTATGGTTCTGGTTCTCCCGATGAATGGCTTAAGAAAGTGGCGTGAACATGAGTTAGAACTTGTGCAAGTTGTCGCAGATCAGGTTG
CTGTCGCTCTTTCACATGCTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAGAATATTGCTTTGGATGTAGCTC
GACAAGAAGCAGAGATGGCCATCCGTGCACGTAACGACTTCCTTGCTGTGATGAACCATGAAATGAGAACGCCCATGCATGCAGTTATTG
CTCTGTGCTCTCTGCTTTTAGAAACAGACTTAACTCCAGAGCAGAGAGTTATGATTGAGACCATATTGAAGAGCAGCAATCTTCTTGCAA
CACTGATAAATGATGTTCTAGATCTTTCTAGACTTGAAGATGGTATTCTTGAACTAGAAAACGGAACATTCAATCTTCATGGCATCTTAA
GAGAGGCCGTTAATTTGATAAAGCCAATTGCATCTTTGAAGAAATTATCTATAACTCTTGCTTTGGCTCTGGATTTACCTATTCTTGCTG
TGGGTGATGCAAAACGTCTTATCCAAACTCTCTTAAACGTGGCGGGAAATGCTGTGAAGTTCACTAAAGAAGGACATATTTCAATTGAGG
CTTCAGTTGCCAAACCAGAGTATGCGAGAGATTGTCATCCTCCTGAAATGTTCCCTATGCCAAGTGATGGCCAGTTTTATTTGCGTGTCC
AGGTTAGAGATACTGGGTGTGGAATTAGCCCACAAGATATACCACTAGTATTCACCAAATTTGCAGAGTCACGGCCTACGTCAAATCGAA
GTACTGGAGGGGAAGGTCTAGGGCTTGCCATTTGCAGACGATTTATTCAACTTATGAAAGGTAACATTTGGATTGAGAGTGAGGGCCCTG
GAAAGGGAACCACTGTCACGTTTGTAGTGAAACTCGGAATCTGTCACCATCCAAATGCATTACCTCTGCTACCTATGCCTCCCAGAGGCA
GATTGAACAAAGGTAGCGATGATCTCTTCAGGTATAGACAGTTCCGTGGAGATGATGGTGGGATGTCTGTGAATGCTCAACGCTATCAAA
GAAGTCTGTAAATGACAAAAGGACATTGGTGTGACAAAGAACATTAAATCATGACTAGTGAATTTGAGATTTCTTCACTGTTCTGTACAC
TCCAAATGGCACAGTTTGTCTTGTAACTAACCTAATTCAATGCTCGTAAAGTGAGTACTGGAGTATCTTGAAAATGTAACTATCGAATTT
ATACAAAAAAAAAAAAACAACTATGTGTTAGGCCTAAAAAATGCAGAAAATTATACGGTTGTGTTCCTATGCAGCGGAACAATCCCTTTG
TAGTCTAGTCCTGTTTGTGAAGGAAGTAATGTGTCTTGCAATTGGGTTTCTAAGATTATGTAAGCACCAAACTAGTTTTCGTTCTTCGAA
CATCAAGGTGACCGATGAACGTTGTGAAGTTTGCACTACTTAATAAGTTTACAAAATCATGTATTTGAAGATCATAATTGTCTAAAAAGC
ACTATGAATATAACTTATTTCATTGTTAATCGTATATATATTAGCCAAAAAGGGATTTAAGTTGTTATAAATATTTCATTGTTAATCGTG
TATATATTAGCCAAAAAGGGATTTAAGTTATAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
nr	Never ripe	ethylene receptor

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	21
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	7
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (60)

Alignment image suppressed for unigene with 60 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (19)

Annotations (manual: 5 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	118740	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	32
5	129816	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Histidine kinase related protein C-terminal - Biological Process: phosphorylation (GO:0016310) - Molecular Function: transferase activity transferring phosphorus-containing groups (GO:0016772) Histidine kinase homodimeric Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301)	15

Preceding Unigenes (2)

Unigene	Build
SGN-U214004	Lycopersicon Combined #3
SGN-U222410	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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