Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U582985 in the current build, Tomato 200607 #2

Unigene SGN-U315620

Unigene Basic Information

Unigene ID:	SGN-U315620
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315620
mRNA sequence:	Length: 1234 bp

>SGN-U315620 Tomato 200607 #1 (17 members)
TAGGGAAGACAGGGAAGGCAGTGCTGAGAGGAGGGCAAAGATTGAGCAATGGAACAGGGAGAAAGAAGAGGCAGATTCTGCTAAATATGG
TAATTTTGACGCTGACAATGGCAGGAATGATGGTGGTGATCACTATGGAGAACAGTTTGATGATGGTTACCCGAAGCAGCAGTAGGTAGA
AAATGGAAGTGATGGCTGCTGCTATGGTAGTGTTGCTCTGGTTAGTGGCACTTCCATCATACTTATTGTTTCACCTGAATGTCTTTCAAT
CTTAGTGGCACATTGCAGAAGTATAGCTCACTGTCCATTTTCCACTGTGCAGGGTGGAGTACAGGTCCACTGTCCTATGATTTTGAAAAG
TGTTACCCATCTTTTATCTTCTTTTTACCAAAATTTTTAAGTACAGGACTTTGTTTAACAGGGATCATAGTGAGGCCTACTTAGAAACAC
TGCCATTTTTCCCGTCTCTGATGCATCCGTTGCTTGCACAGTGAAGCTTGCAGTGCTCAATTTTTCTTGTTAATTTTTCCAATGTCCTTT
TTCCTGTCTCATATTGACAACTATTTATTTCTTATATAGGGAACCAGCCAACGGTAATATAGCATCTGTTAATTTGTAGAACAGCTTTTT
AACTTTAGGGCCTCTGATCAAATGATTTTTTTCTCTCGCTGGTTCGTTCTTCCTGAAAATGGAACATTTGATTAAAGTGATTGGGAGTAG
AAACATAGCCCTTCCAAGATTTCTGCCCACCTTAGATTTGTTAGTTGTCTACAGTCTAGGGGCTTCTCTCTTCCTAGGCTAATTCATAGA
GTTTGTCATTCTTATAAGATTGATGTTAATCCAAGGTTTTGCAGGTTAAAAGGTTCCTGCTTTGCAGTGGTCGTGCCTACCTTTACATAG
CAGCTTACAATGGTCTTGTATACAGGTTTTCTCTGCTGCAGACGAGTCCATGGGCTTCTAACATGCTAGGGATGGCGAGAAGTGAAGGAA
CCAAGTCCATGGACCTATGAAGTTCTTTCCGTTTTGGAGTTTTATCATTTGTTAGGCATTACAGGTTTATATCCTCAAAGACAATAGTGC
TGTGTATAACTGTACTGGTTGGTGATCTGTTGGGTTGAATTTCATTTCAGTACTTAATCGCGTTTTACTTTCAGTCGTTTGGAGGTTTCT
GTTGAAACAAATTTGCTGAAGAGAGCANGATTTTTATGTGGCAGTTGCTAGACTGCAGTATGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	10
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (3)

Annotations (manual: 0 | blast: 0 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101996	Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270) U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634)	25
2	118983	U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634) Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	23
5	129722	U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634) Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	16

Preceding Unigenes (1)

Unigene	Build
SGN-U214830	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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