Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564338 in the current build, Tomato 200607 #2

Unigene SGN-U318605

Unigene Basic Information

Unigene ID:	SGN-U318605
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318605
mRNA sequence:	Length: 1869 bp

>SGN-U318605 Tomato 200607 #1 (16 members)
AGTACTGTGAAAGAGAAAGCAGAGTATCGCCATGGTTTCGCCGCACGGCATCAAGCTCGCTGTTTATCTAATCTCTTCTTACTTCGGCGA
ACTTAATGCTAAGGTTTGCGACTGTCTGTTGCGAAGAGGAACACAAACTTTACATCAGGTTGTAAGTTCCACAGAGCTTAGCAGAAAGAA
TGTTAAGAACTGTTTGCTTGTGCTTATTCATCACAATTGTGTTCAAGCCTTTGCAATTCGACAACCAGGTGGATTTGGGGAGGAAGCAAA
AATTATTACACAATACATGGCACTATTTGACAACATTATACATAAATTGAGGTTCCCTAAATTTATAGAGATTGTGTCCGAGGAGCTGGG
TAAAGAGTGTGAAGAGATTTTGGAATGGTTGCTTCAGCATGGCAGGCTTTCACTCAGTCAAATTATAGTAAAATACAAGCAGGCATCGAA
ACAAGGAGATTCTAGTGCTGATGCTGCACAGGATAGCTTCAACAGGCTTGTCAACGCTAGATTTGTGGAACGCTGTCCTGCCCCTGACCC
GCTTCTTGAACCACCTGCTGAAGAAGAAACTGCTGCAAAGAAACGAGGTGCTAAATCTGCCAAGATTCAAGCACAAACCATGGAACAACA
AGCCTTAGCAGCAGCAGCTCCAATGGAATCCATGAGATTTTTAGTTGAAAACATCTGGAATGATTCTGTGGAAAAAGCTGACAAAAGGAC
TACTGATGTGAAATGTGGCATGAAGCGTAAGCAAGAGGATTTGGAGTCAAACACAAAAGATCCGGCTACAGGCGAAAAGGAAGTACTTTG
GCGTGCCAACTTTGAAGAATTCATTCGCCGCTTGAGACACAAGGCTTGTGTTGCAAATGTGAAAGTACGTGTCAACAATGATGCTGCCAT
TGTTCTTGCTGCGACCCTGGAGTTGAGTAGACATTCTGAAACTAAATTGAGAATTGATAACTCAGTTCCCCAGTCCATAAATGCTATTTA
TGATGAGGTGATAAAGAGGGAAGGTGGTCTTGGTATGGACCTGGAGCGTATCAGAGCTTCCCTTGATGATTTAGGATGTGAAGCCCCATT
GATGGAAATAGATGAAACTTATAGTGTAGATTTGAAGAACATTATTGAACAGGCTCGCATTGAAGAGGTGGAATCCATTGTATTAAAAAG
ATATGGGAGGGAGGCCTACAGGATGTTCAGATTACTGTCGAAAGCTGATCGTCTTGTTGAAACGGATAAGATTTCAGATACCACATTTGT
TGAAAAGAAAGACGCAGTCAAGATTCTATTTAAGCTGTGGAAAGATGACTACTTAGAGATGAAGAAAGTTATTGCACGTGCACCAAAGCA
ATCAGAATTCATTCTGTGGAAAATTAATAAGCAGTCTCTTTGGGAACATATTCTAGATGAAATGTACCATGCTGCCCTAAATTTGAGATT
GAGAACAACACATGAGAAAGAACAGGAAAAAGAGATTCTTCAGATGCCCAAAGATAAGCTGGTAGGAGAATTGGGCAACAAATACATGCG
CCTAAGAAAAGTTTGCATTGTTCTGGAATCTTCCCTAATGAATCTTGATGATTCTCTCATGCTCTTCCATGACTTTTAAAATGATTTAAT
TTTACATTCCCCACCTTTGCTTCACTGACCTTACTTACCTCTTTTTTATTATTAGAGAATTTTGGATGTGCCCTTGGGATCTTGCATTCA
GCATCTCATCAACAAGTATTTTAATGTGTGCACTATTTTATTTCTTGAATTATGGGGAGACTTATTGAAGGAATCTTTGTACTGTCTAAA
AANNNNANANAAAAAAAAAAAAAAAAANCCCTCGGGGGGGGGCCGGGCCCCCATTCCTGGGGGGGGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	104429	RNA polymerase III subunit RPC82-related helix-turn-helix RNA polymerase III subunit RPC82 C -terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	4
2	123541	RNA polymerase III subunit RPC82 C -terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase III subunit RPC82-related helix-turn-helix	4
5	133723	RNA polymerase III subunit RPC82 C -terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase III subunit RPC82-related helix-turn-helix	4

Preceding Unigenes (1)

Unigene	Build
SGN-U216575	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: