Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U582122 and SGN-U582123 in the current build, Tomato 200607 #2

Unigene SGN-U318810

Unigene Basic Information

Unigene ID:	SGN-U318810
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318810
mRNA sequence:	Length: 3988 bp

>SGN-U318810 Tomato 200607 #1 (3 members)
TCAAAGAAGGTTGTAGAACAAAGAAAAGATGAGTTCAATTTCGTTAGAATGTTTTGATGATTTTACATAGAGAAGTTTATTCAAAGTATG
TTAGGTAAATGTTGGAGAGTGAAACACCAAAAACTGTTGTGATTATTATATGAATGAAAATGTAGATCCATATTTTGCAGTATCAGCTCT
TAATTCTCTCATATTCTGACACCCTTTTCTCCCTTGAAAAGATAAGAGGATGATGTCTTCACGTGATGTCCATAACTTCCTGTTAACTTG
TTATTCGAGAGCTGCACGACAAATGAAGATTGAAGGTTATGCTAATTTTGGGATGACACCAAATAACTATGTTTGGAAAGGAAACAATGG
AGCAACTCACTTGTTTCTATTATTTTGTATGTTCTATTTAGATTTGAGTCGAGATGTCGTCTTCAAGACCTAGCCAATCTTCCACCACTT
CATCAAGATCAAAGCACAGTGCTAGGATCGTTGCACAGACCTCTATAGATGCAAAGCTGCATGCAGACTTTGAGGAGTCAGGTGATTCCT
TTGACTATTCAAGCTCAGTGAGGGTTACAAGTGTCGCTGGAGATGAGGAAAAACCAAAGTCAGACAAAGTTACCACCGCCTACCTTCATC
AGATCCAAAAGGGCAAGTTTATCCAGCCATTTGGTTGTCTGTTAGCCCTGGATGAGAAAACATTAAAGGTCATAGCATTCAGTGAGAATG
CCCCTGAAATGCTGACCATGGTTAGCCATGCTGTTCCAAGTGTTGGTGAGCATCCAGTTCTTGGCATCGGGACTGATATCAGAACGATCT
TCACTGGTCCTAGTGGCGCAGCATTGCAGAAAGCCTTGGGGTTTGGGGAGGTTTCTCTGTTAAATCCTGTCCTTGTTCACTGTAAAAATT
CTGGAAAGCCATTTTATGCAATTGTTCATAGGGTTACAGGTAGCTTAATCCTTGATTTTGAGCCTGTGAAGCCCTATGAAGTACCCATGA
CTGCTGCAGGGGCCCTGCAGTCATATAAACTAGCAGCCAAAGCCATTACTCGCTTGCAGTCCTTGCCCAGTGGCAGTATGGAAAGACTCT
GTGACACAATGGTTCAGGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGGATATAAGTTTCACGAGGATGATCATGGAGAGGTGG
TGTCTGAGATCACAAAGCCTGGCCTCGAGCCTTACCTTGGTTTACATTATCCTGCTACAGATATTCCACAGGCTGCACGGTTTTTGTTTA
TGAAGAATAAGGTCCGAATGATTTGTGATTGCCGAGCAAAGCATGTGAAGGTAGTCCAAGATGAGAAGCTTCCATTTGATTTAACATTGT
GCGGCTCTACTCTTAGGGCCCCTCACTACTGCCATTTACAGTATATGGAGAACATGAATTCAATTGCATCACTTGTAATGGCAGTTGTGG
TCAATGACGGGGATGAAGAAGGAGAAAGCTCTGATTCTTCACAATCTCAAAAAAGAAAAAGGCTATGGGGCCTGGTTGTTTGCCACAACA
CGACCCCAAGGTTCGTTCCCTTTCCACTGAGGTATGCATGTGAGTTTCTTGCACAAGTCTTTGCCATACACGTCAACAAGGAACTGGAAT
TGGAAAATCAATTCCTTGAGAAAAATATTCTGCGTACTCAGACTCTCTTGTGTGATATGCTGATGCGAGATGCTCCCCTAGGTATCGTGT
CACAGAGCCCCAACATTATGGATCTTGTCAAATGTGATGGTGCGGCTTTGCTCTATAAGAATAAGATACATCGATTAGGAATGAACCCAA
GTGACTTTCAGCTGCAGGATATAGTATCATGGCTTTGTGAGTATCATACAGATTCCACAGGCTTGAGTACGGATAGCTTGTATGATGCTG
GTTTTCCTGGGGCTCTTGCTCTTGGTGATGCAGTCTGTGGTATGGCAGCTGTGAGAATATCTGATAAGGACTGGCTGTTCTGGTTCAGGT
CACACACTGCTGCTGAAGTTAGATGGGGTGGTGCAAAGCATGAACCTGGTGAGAAGGATGATGGCAGGAAAATGCATCCTAGGTCATCAT
TCAAAGCATTCCTGGAAGTTGTCAAGACAAGGAGTATACCCTGGAAGGATTATGAGATGGATGCAATCCACTCTTTGCAGCTCATACTAA
GAAATGCTTTCAAGGATGCTGAGGTTGTGAATTCAAATACCAATTCCATCTATAAGAAGCTTAATGATCTAAAGATTGACGGAATGCAGG
AACTAGAATCAGTGACTGCTGAAATGGTCCGCTTAATTGAAACAGCTTTAGTTCCTATATTAGCAGTTGATGTTGATGGGCAGGTTAATG
GATGGAACACAAAAATAGCTGAATTAACTGGTCTTCCTGTTGATGAAGCAATTGGGAAACATCTTCTCACTCTCGTGGAGGATTCATCAG
TTGATACCGTGAATAAGATGTTGGAATTAGCATTGCAGGGGAAAGAGGAAAAAAATGTAGAGTTTGAAATAAAAACACATGGGCCGTCAA
GAGATTCTAGTCCAATCAGCTTAATCGTGAATGCATGTGCAAGCAAAGATGTTCGGGATAATGTTGTGGGTGTGTGTTTTATGGCTCATG
ATATAACTGGACAAAAAAGCATCATGGACAAGTTCACCCGAATCGAAGGTGACTATAGAGCGATTATCCAAAATCCTCACCCATTGATCC
CACCAATATTTGGCACTGATCAATTTGGCTGGTGTTCTGAGTGGAACACTGCAATGACCAAGTTAACTGGATGGCGGCGTGATGATGTTA
TGGATAAAATGCTGTTAGGGGAGGTTTTTGGGACACAGGCAGCTTGCTGCCGTCTCAAGAATCAAGAAGCGTTTGTAAATTTCGGAGTTG
TACTAAACAATGCTATCACTGGTCAAGAATCTGAGAAGATTCCTTTTGGTTTCTTTGCACGTTACGGGAAATATGTGGAGTGCTTACTCT
GTGTGAGCAAAAGGTTAGATAAAGAGGGTGCAGTCACGGGACTCTTTTGTTTCCTGCAACTTGCAAGCCATGAGTTGCAACAAGCTCTTT
ATGTTCAACGATTATCAGAACAAACTGCGTTGAAAAGATTGAAAGTATTAGCTTACATAAGGAGGCAAATTAGGAATCCTCTTTCTGGGA
TTATATTCTCTCGGAAGATGCTAGAGGGGACTAGCTTGGGCGAAGAGCAGAAAAATATACTGCATACAAGTGCACAGTGTCAGCGTCAGC
TCAACAAAATTCTTGATGATACAGATCTTGATAGCATCATAGATGGGTATTTGGATCTGGAGATGCTCGAGTTTAAGCTGCATGAAGTAT
TGGTAGCATCTATAAGTCAAGTCATGATGAAGAGCAACGGAAAGAATATAATGATCTCGAATGACATGGTTGAAGATCTTCTTAATGAAA
CTTTATACGGAGATAGTCCGAGGCTTCAACAAGTCCTTGCTAACTTTTTGTTAGTATCTGTGAACGCTACACCAAGTGGCGGCCAGCTTA
GTATTTCAGGCAGGCTAACAAAAGATCGTATAGGAGAATCTGTTCAGCTTGCTCTCTTGGAATTCAGGATAAGACATACAGGGGGTGGAG
TGCCAGAAGAATTGCTTGGCCAAATGTTTGGTAGTGAAGCCGATGCATCTGAAGAAGGGATCAGCTTACTTGTCAGCAGAAAACTGGTCA
AGCTGATGAATGGGGAAGTTCAGTATCTAAGAGAGGCTGGGCAATCAACTTTCATTATATCCGTTGAACTCGCAGTGGCTACCAACTCAA
GCTGATGATTTTCAGTACCCTCTTAAGGTCCTAAACTAATTCTGCAGGTCTGTATAGTGGAAGACGATTTCAAGTTTAAGATTTCCTCTG
TTTTGTGCTCGTTCTTGTCATTTTCCCTCCTCTTTGTTACATTGTTTGCCTTGGATTTTTAAAAGTCACTTGAACAATTGCTTCTTCAGC
ATTTCAATTTCAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
phyA	phytochrome A

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P121583 (1134 Aa)

MSSSRPSQSSTTSSRSKHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEKPKSDKVTTAYLHQIQKGKFIQPFGCLLALD
EKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGTDIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLIL
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHEDDHGEVVSEITKPGLEPYLGLHYP
ATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLWALLLGPLTTAIYSXMENMNSIASLVMAVVVNDGDEEGESSDSSQSQX
KKKAMGPGCLPQHDPKVRSLSTEDACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALL
YKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGE
KDDGRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVVNSNTNSIYKKLNDLKIDGMQELESVTAEMVRLIETALV
PILAVDVDGQVNGWNTKIAELTGLPVDEAIGKHLLTLVEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDV
RDNVVGVCFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTKLTGWRRDDVMDKMLLGEVFGTQAACCR
LKNQEAFVNFGVVLNNAITGQESEKIPFGFFARYGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLA
YIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLEMLEFKLHEVLVASISQVMMKSNGKNIM
ISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNATPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASE
EGISLLVSRKLVKLMNGEVQYLREAGQSTFIIPLNSQWLPTQADDFQYPLKVLN

SignalP predicts non-secretion with a score of 0.035

IPR000014 PAS
IPR003018 GAF
IPR001294 Phytochrome
IPR003661 Histidine kinase A, N-terminal
IPR003594 ATP-binding region, ATPase-like
IPR001093 IMP dehydrogenase/GMP reductase

Prediction based on longest six frame method

>SGN-P248031 (1125 Aa)

VEMSSSRPSQSSTTSSRSKHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEKPKSDKVTTAYLHQIQKGKFIQPFGCLLA
LDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGTDIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSL
ILDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHEDDHGEVVSEITKPGLEPYLGLH
YPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQS
QKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAA
LLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEP
GEKDDGRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVVNSNTNSIYKKLNDLKIDGMQELESVTAEMVRLIETA
LVPILAVDVDGQVNGWNTKIAELTGLPVDEAIGKHLLTLVEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASK
DVRDNVVGVCFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTKLTGWRRDDVMDKMLLGEVFGTQAAC
CRLKNQEAFVNFGVVLNNAITGQESEKIPFGFFARYGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKV
LAYIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLEMLEFKLHEVLVASISQVMMKSNGKN
IMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNATPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADA
SEEGISLLVSRKLVKLMNGEVQYLREAGQSTFIISVELAVATNSS

SignalP predicts non-secretion with a score of 0.03

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	118742	PAS fold Phytochrome chromophore binding site GAF PAS - Molecular Function: signal transducer activity (GO:0004871) - Biological Process: signal transduction (GO:0007165) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) PAS fold-2 Phytochrome central region Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301) Phytochrome - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: G-protein coupled photoreceptor activity (GO:0008020) Phytochrome A/B/C/D/E - Biological Process: red far-red light phototransduction (GO:0009585) - Molecular Function: photoreceptor activity (GO:0009881) - Biological Process: protein-tetrapyrrole linkage (GO:0017006) - Molecular Function: protein homodimerization activity (GO:0042803) - Biological Process: regulation of transcription (GO:0045449)	32
5	129213	PAS fold Phytochrome chromophore binding site GAF PAS - Molecular Function: signal transducer activity (GO:0004871) - Biological Process: signal transduction (GO:0007165) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) PAS fold-2 Phytochrome central region Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301) Phytochrome - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: G-protein coupled photoreceptor activity (GO:0008020) Phytochrome A/B/C/D/E - Biological Process: red far-red light phototransduction (GO:0009585) - Molecular Function: photoreceptor activity (GO:0009881) - Biological Process: protein-tetrapyrrole linkage (GO:0017006) - Molecular Function: protein homodimerization activity (GO:0042803) - Biological Process: regulation of transcription (GO:0045449)	30

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U230323	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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