Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576443 in the current build, Tomato 200607 #2

Unigene SGN-U320689

Unigene Basic Information

Unigene ID:	SGN-U320689
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320689
mRNA sequence:	Length: 1967 bp

>SGN-U320689 Tomato 200607 #1 (10 members)
TTTTTTCCTCTAAAGTCCAATTTCTTTCTTCTTCTTCTTACAACCCCCAAGTTCTTCCCTTTACGCTTATTAAGCCAAAGAAATTTTTGC
TTTCTTCTGTCTGTAATTCAATGGCAAAGAAATCCAAAGATAAGAAGAAACAACAACAACCATACAATGAAACCTCAAATTCTTCAGATA
TTTTCAATACCCTTTTTGGAGCAACCCCAGCAGATTCCAACATTGCTTCACTCTTTTCTGACGAAAATCCATTTAAAAGAAAGCCTAATG
ATAATCCAACAGCTACCGAAGAGCCTAAATTAGGTGTTGTAGAAGTTTCTATTGAGAATCAAACTGATGGGGTTTCTGGGAATAATGATT
CTGGTAGTGCAGAGCTTAAGAAGAGGAAGAAAAAGGATAAAAAAGTAAACTTGGATTCTGGGTCTGTAGCTGAAGAAGTTAATGAGGAAG
AAGGGGGGAAATCGAAAAGGGTTGCTTTATCTGGGGTTGAGGAATCAAATGGTGTAGTTTCTGATTCTGGGAGGAAGAAGAAGGCTAAAA
ATGTAATTTTGGGTTTGGAATCTGTAGGTGAAGGAGTTAAGGAATCAAATGATGGAGTTTCTAATTCTGGGAACCTGGAAAAGTCGGGTT
TAGAGTCGAAGAAAGATAAGAAGAAGAAGAGGAAAAGGGATGAGATTGAGGCGGAGTATGAGGCGAAGCGATATGGGGTGGTTGCGGTGG
AGGATGTGGAGAAAGGGATTGGAGAAATGGTGGTAGGGGAAAAGAGGAAGAAGATGGATAATCCAGAGGATATGATGGTCTCAAATGAGG
GATTTGATGATGAGAGTAAACTTTTAAGGACAATTTTTGTTGGGAATTTGCCTTTGAAGATCAAGAAGAAGGCTTTACTGAAGGAGTTTG
GGAGTTTTGGAGAGATAGAATCAGTGAGGATTCGGTCCATTCCGGTAGCCGATAGTGCAACTCCAAGGAAGGCTGCTATCATTAAGCAAA
AACTCAATGATAATGCGGACAGTGTTAATGCTTATGTTGTTTTTAAATCAGAGGAATCTGCCCAGGCATCTTTGGCTCATAATATGGCAG
TGGTTGGAGAAAGACATATCAGAGTTGACAGAGCATGTCCACCACGTAAGAAGATGAAGGGAGAAAATAGTGCTCTGTATGACAACAAAA
GGACTCTTTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAAATTTATCAGCTGTTCTCTGGTATGAAAGAATTTGGATCGAGCA
TTGAGGCTGTTCGGGTGATCAGAGATCCCAATACTCTCCTAGGAAAAGGAATTGCGTATGTTTTGTTCAAAACGAGGGAGGCTGCGAACA
CTATTTCTAGAAAGCGTAACTTGAAATTACGAGATCGCGAGCTGAGAGTGTCTCATTCTAAAGCAGATTCTACTCCATCTAAGAGGAAAA
GTTTATCAACCGAAGACAGATTTAGGTCCCCAGCAAAGAAGTTTGCAGCAGATTCAGCTAGACCAGGCAGTAGTAGCTATAAGGCTACAG
CAAAGTCTGACATGTCCTATCAGGGCGTGAAGGCAAGCAAATCTGGTGTCCAGAAAAAAACTCAATCCAGGATGAGCGACCGGGGAAAGT
TGAAACCTAAAGCACAGTTATCGACAAAGCCAAAAGAGCGCATAGGAAAGAGACCATCTGTTGCTGCCCGAAAAGCAAAAGAACTCAAGG
CTGCTGCCTCTGGCTTGAAACAAATGGGAACAAAACGGAAGATGGACAACCGAACACCTGACACTGCAGGCAGAAAGAAGAAATTTAGAA
AATCTTAGGTCATACATTCTCAACAATGTTATACATGAAAGTGTTCATTCATATGTTCCCTTTTCAGGATTATAGTTCTCTGTTTCATCT
TTAAAAATTAAATCGTGTACTACTCCCTCTTTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	121906	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6
5	132108	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6

Preceding Unigenes (2)

Unigene	Build
SGN-U222870	Lycopersicon Combined #3
SGN-U225201	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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