Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U568676 and SGN-U568678 in the current build, Tomato 200607 #2

Unigene SGN-U321056

Unigene Basic Information

Unigene ID:	SGN-U321056
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	321056
mRNA sequence:	Length: 1326 bp

>SGN-U321056 Tomato 200607 #1 (10 members)
ATCCACACCCACTCACACCACCTCACCATAAGACACAAAAGTCTTATTCCTGAGTTTCCCTTGAAATACTCTCACTTTATACATTTCAAC
AAACCTAATTAGCTAAAGCCCCAAACTCTCTTCATATATATCCCACCATCCCTTTTCTCTTTTCCACCATTCTTCTTCCCAACAACAAAA
GTTCCCACACACTTTCCTTTTTTTTTCTTTTTCTTTCTAATAACACATAGATGGGTTTTGATGATATTTGCAACACTGGCCTAGTTTTAG
GATTAGGCTTTTCTTCAACCGCCGATCACAAATCAAAGAAAATAACCACAACACCATTAGTAGGCAAAGGTCCGTGTGTTGGCTTTGAAG
AACCTTCACTAACTTTAAGCCTAATTTCCGGTGATCGTACGTACGAACAACAGGCGATGAAAATTAGTAAAGATCATCAATCTGCTGATT
TGTACAGACAAGATAGTGCTGCCTCTTCCTACTCAAATGCTAGTGTCAAAAGGGAGAGAGATGTTGGTAGTGAAGAGACAACTACTGAAG
TAGAAAGACTTTCCTCCAGAGTTATTAGTGACGAAGATGATGATGGATCTAACGCTAGAAAGAAACTTAGACTCACTAAACCACAATCTG
CACTTTTAGAGGAAAGTTTCAAGATACACAGCACTCTCAATCCTAAACAAAAACAGGATTTAGCCAGAGAACTCAATTTAAGGCCACGCC
AAGTTGAAGTTTGGTTTCAGAACAGAAGAGCCAGAACAAAACTGAAGCAAACAGAGGTAGACTGTGAATTCCTAAAAAAATGCTGCGAGA
CACTGACAGATGAAAACAGAAGGCTTCACAAGGAATTGCAGGAACTAAAGGCTCTAAAAATAGCACAACCTTTGTACATGCAGTTACCAG
CGGCAACCTTAACCATGTGTCCTTCATGCGAAAGGATCGGCGGCGGTGTTGGAGAAACTCCGTCGAAAAATGCTTTTACTATTGCTCAAA
AGCCTCACTTGTACAGTCCATTCAACAATCCGTCGGCAGCTTGTTAATGATAAATGCCATATATAAAATCATGTTTAGAAAAAAGCCGCC
ACTTTTTTTGGTTAAAAGGCTTGTATGACTAGTGCAGTTGTATGTGTAGAGTAATTAGAATTAAGGTCACTAATCAATATTTTTAATTTG
TTTCTTTATTATGGTCCATAGTATAAGTCTGTAAATCATTAAGCAAATATATACATATGGATGAATTATTATTATTTATATATAGTACAA
TCTATTGATCTTCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101432	Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-like	183
2	118482	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	93
5	129263	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Leucine zipper homeobox-associated - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	28

Preceding Unigenes (2)

Unigene	Build
SGN-U221068	Lycopersicon Combined #3
SGN-U231326	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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