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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U587198 in the current build, Tomato 200607 #2

Unigene SGN-U335203

Unigene Basic Information

Unigene ID:	SGN-U335203
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	335203
mRNA sequence:	Length: 170 bp

>SGN-U335203 Tomato 200607 #1 (1 members)
CACCCAAAATTAATACCTTGAAATCGCAAACCCTAAACAAACCATGGAAGAAATCAAGTGAATTGGGTTACAGGAGGATGATGTATGTAG
TGGTACCCAAAGTAGTTCCGGATAAGAAGCTATCTGATTTATTTGCGGAAAGAGGTAAAGAATCTGAATAAACTTGTGCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E284957
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25990286\|gb\|AAK49535.2\|	126	1e-27	58.02	375 bp (220.6%)	2
Description:	gi\|25990286\|gb\|AAK49535.2\| chloroplast protein 12 [Nicotiana tabacum] >gi\|1617197\|emb\|CAA96569.…
arabidopsis	blastx	At3G62410.1	84	1e-16	49	294 bp (172.9%)	2
Description:	Symbols: CP12, CP12-2 \| CP12-2 \| chr3:23101982-23102377 FORWARD
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P137615 (288 Aa)

IDNPLRTXGAAPXVAAALELVDPRAAGEGAHFLSFYNKPNNLSESPKINTLKSQTLNKPWKKSSELGYRRMMYVVVPKVVPDKKLSDLFA
ERGKESEKLXAEDPVSGQCNAAWYVVEETSAEPSHARDNKKESDVLENYCQDSPEPDKCLTYNKPFDDXLVTFTPVIAEPSSNAKSVYQK
LKSLFKMAYGMGPSLKVPGPEAILNQNALAGVPXTNNTVTFIILPQASESSTYKIALFPGNIRPVLKLPCSLRTSVFYLLSPKIIYFDIC
PYKQYIPSTGDIYYNRLF

SignalP predicts non-secretion with a score of 0.166

IPR003823 Protein of unknown function CP12

Prediction based on longest six frame method

>SGN-P264634 (55 Aa)

SESPKINTLKSQTLNKPWKKSSELGYRRMMYVVVPKVVPDKKLSDLFAERGKESE

SignalP predicts non-secretion with a score of 0.023

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P264635 (55 Aa)

DPPHKFIQILYLFPQINQIASYPELLWVPLHTSSSCNPIHLISSMVCLGFAISRY

SignalP predicts non-secretion with a score of 0.223

No InterPro domain matches or not analyzed.

Gene Family (2)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102204	Protein of unknown function CP12	19
2	119185	Protein of unknown function CP12	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U233369	Lycopersicon Combined #3

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